Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | A6J38_RS08060 | Genome accession | NZ_CP020411 |
| Coordinates | 1630399..1630812 (+) | Length | 137 a.a. |
| NCBI ID | WP_005693727.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain FDAARGOS_199 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1625399..1635812
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J38_RS08040 (A6J38_08035) | - | 1625887..1628481 (-) | 2595 | WP_005693721.1 | penicillin-binding protein 1A | - |
| A6J38_RS08045 (A6J38_08040) | comA | 1628580..1629377 (+) | 798 | WP_005693722.1 | competence protein A | Machinery gene |
| A6J38_RS08050 (A6J38_08045) | comB | 1629378..1629884 (+) | 507 | WP_005693724.1 | competence protein ComB | Machinery gene |
| A6J38_RS08055 (A6J38_08050) | comC | 1629881..1630402 (+) | 522 | WP_005693726.1 | competence protein ComC | Machinery gene |
| A6J38_RS08060 (A6J38_08055) | comD | 1630399..1630812 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| A6J38_RS08065 (A6J38_08060) | comE | 1630822..1632159 (+) | 1338 | WP_005693728.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| A6J38_RS08070 (A6J38_08065) | - | 1632171..1632857 (+) | 687 | WP_032828380.1 | ComF family protein | - |
| A6J38_RS08075 (A6J38_08070) | nfuA | 1632933..1633529 (+) | 597 | WP_005693730.1 | Fe-S biogenesis protein NfuA | - |
| A6J38_RS08080 (A6J38_08075) | nudC | 1633596..1634390 (+) | 795 | WP_005693731.1 | NAD(+) diphosphatase | - |
| A6J38_RS08085 (A6J38_08080) | - | 1634426..1635016 (+) | 591 | WP_005693732.1 | YjaG family protein | - |
| A6J38_RS08090 (A6J38_08085) | - | 1635156..1635428 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=222408 A6J38_RS08060 WP_005693727.1 1630399..1630812(+) (comD) [Haemophilus influenzae strain FDAARGOS_199]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=222408 A6J38_RS08060 WP_005693727.1 1630399..1630812(+) (comD) [Haemophilus influenzae strain FDAARGOS_199]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comD | Haemophilus influenzae 86-028NP |
99.27 |
100 |
0.993 |