Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A6J38_RS08045 Genome accession   NZ_CP020411
Coordinates   1628580..1629377 (+) Length   265 a.a.
NCBI ID   WP_005693722.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_199     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623580..1634377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J38_RS08025 (A6J38_08020) recR 1623808..1624410 (-) 603 WP_005626527.1 recombination mediator RecR -
  A6J38_RS08030 (A6J38_08025) - 1624472..1624801 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  A6J38_RS08035 (A6J38_08030) - 1624954..1625799 (-) 846 WP_005693720.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  A6J38_RS08040 (A6J38_08035) - 1625887..1628481 (-) 2595 WP_005693721.1 penicillin-binding protein 1A -
  A6J38_RS08045 (A6J38_08040) comA 1628580..1629377 (+) 798 WP_005693722.1 competence protein A Machinery gene
  A6J38_RS08050 (A6J38_08045) comB 1629378..1629884 (+) 507 WP_005693724.1 competence protein ComB Machinery gene
  A6J38_RS08055 (A6J38_08050) comC 1629881..1630402 (+) 522 WP_005693726.1 competence protein ComC Machinery gene
  A6J38_RS08060 (A6J38_08055) comD 1630399..1630812 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  A6J38_RS08065 (A6J38_08060) comE 1630822..1632159 (+) 1338 WP_005693728.1 type IV pilus secretin PilQ family protein Machinery gene
  A6J38_RS08070 (A6J38_08065) - 1632171..1632857 (+) 687 WP_032828380.1 ComF family protein -
  A6J38_RS08075 (A6J38_08070) nfuA 1632933..1633529 (+) 597 WP_005693730.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31541.85 Da        Isoelectric Point: 5.9495

>NTDB_id=222405 A6J38_RS08045 WP_005693722.1 1628580..1629377(+) (comA) [Haemophilus influenzae strain FDAARGOS_199]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSSAQTYLQDFQPFNINILDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=222405 A6J38_RS08045 WP_005693722.1 1628580..1629377(+) (comA) [Haemophilus influenzae strain FDAARGOS_199]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCCCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
GCGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAATATTAATATATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTGGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

100

100

1
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment