Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   A6J38_RS08055 Genome accession   NZ_CP020411
Coordinates   1629881..1630402 (+) Length   173 a.a.
NCBI ID   WP_005693726.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_199     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624881..1635402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J38_RS08035 (A6J38_08030) - 1624954..1625799 (-) 846 WP_005693720.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  A6J38_RS08040 (A6J38_08035) - 1625887..1628481 (-) 2595 WP_005693721.1 penicillin-binding protein 1A -
  A6J38_RS08045 (A6J38_08040) comA 1628580..1629377 (+) 798 WP_005693722.1 competence protein A Machinery gene
  A6J38_RS08050 (A6J38_08045) comB 1629378..1629884 (+) 507 WP_005693724.1 competence protein ComB Machinery gene
  A6J38_RS08055 (A6J38_08050) comC 1629881..1630402 (+) 522 WP_005693726.1 competence protein ComC Machinery gene
  A6J38_RS08060 (A6J38_08055) comD 1630399..1630812 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  A6J38_RS08065 (A6J38_08060) comE 1630822..1632159 (+) 1338 WP_005693728.1 type IV pilus secretin PilQ family protein Machinery gene
  A6J38_RS08070 (A6J38_08065) - 1632171..1632857 (+) 687 WP_032828380.1 ComF family protein -
  A6J38_RS08075 (A6J38_08070) nfuA 1632933..1633529 (+) 597 WP_005693730.1 Fe-S biogenesis protein NfuA -
  A6J38_RS08080 (A6J38_08075) nudC 1633596..1634390 (+) 795 WP_005693731.1 NAD(+) diphosphatase -
  A6J38_RS08085 (A6J38_08080) - 1634426..1635016 (+) 591 WP_005693732.1 YjaG family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19941.13 Da        Isoelectric Point: 10.0952

>NTDB_id=222407 A6J38_RS08055 WP_005693726.1 1629881..1630402(+) (comC) [Haemophilus influenzae strain FDAARGOS_199]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEGSSRFHEIENELAVKRSELLHQQKILTSLQQQSESR
KLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQKPILHLQLTGHFEKTKTFLSALLANSSQLSVSRLQFMKPEDGPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=222407 A6J38_RS08055 WP_005693726.1 1629881..1630402(+) (comC) [Haemophilus influenzae strain FDAARGOS_199]
ATGAAAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATAGAGGGGAGTTCACGTTTCCATGAAATTGAAA
ATGAGTTAGCGGTGAAACGTTCAGAATTGTTGCATCAACAGAAAATTTTAACCTCTTTACAACAGCAGTCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCGCGTAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAAAAGCCTATTTTGCATTTACAGCTTACAGGTCATTTTGAAAAAACGAAGACAT
TTTTATCCGCACTTTTGGCTAATTCGTCACAGCTTTCTGTAAGTCGGTTGCAATTTATGAAACCCGAAGACGGCCCATTG
CAAACCGAGATCATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae Rd KW20

100

100

1
  comC Haemophilus influenzae 86-028NP

98.266

100

0.983

Multiple sequence alignment