Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   C2H94_RS16790 Genome accession   NZ_CP026034
Coordinates   3191402..3191761 (-) Length   119 a.a.
NCBI ID   WP_249853170.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186402..3196761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS16755 (C2H94_16690) - 3186491..3186682 (-) 192 Protein_3232 hypothetical protein -
  C2H94_RS16760 (C2H94_16695) - 3186772..3187062 (-) 291 WP_029316956.1 contact-dependent growth inhibition system immunity protein -
  C2H94_RS16765 (C2H94_16700) - 3187079..3188941 (-) 1863 WP_125121307.1 T7SS effector LXG polymorphic toxin -
  C2H94_RS16770 (C2H94_16705) - 3189078..3189182 (+) 105 Protein_3235 peptidoglycan-binding domain-containing protein -
  C2H94_RS16775 (C2H94_16710) - 3189213..3189872 (-) 660 WP_041850963.1 hypothetical protein -
  C2H94_RS16780 (C2H94_16715) - 3190070..3190450 (+) 381 WP_069149619.1 hypothetical protein -
  C2H94_RS16785 (C2H94_16720) - 3190939..3191061 (-) 123 WP_224588918.1 response regulator aspartate phosphatase I -
  C2H94_RS16790 (C2H94_16725) rapF 3191402..3191761 (-) 360 WP_249853170.1 hypothetical protein Regulator
  C2H94_RS16795 (C2H94_16730) yjcS 3191868..3192185 (+) 318 WP_015252322.1 putative quinol monooxygenase -
  C2H94_RS16800 (C2H94_16735) - 3192324..3192641 (+) 318 WP_041345315.1 hypothetical protein -
  C2H94_RS16805 (C2H94_16740) manR 3192949..3194895 (+) 1947 WP_249849650.1 mannose transport/utilization transcriptional regulator ManR -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 14310.26 Da        Isoelectric Point: 5.2327

>NTDB_id=222258 C2H94_RS16790 WP_249853170.1 3191402..3191761(-) (rapF) [Bacillus subtilis strain PK5_52]
MYHFRTRDLVIALTYYREAEKYLDLLDKNANTDKAEFYFKMSEVYYYMKETHFSMNYAQRAYSIFKEQKDAQGNLTYGKE
MVQCQFFIFGNLLDKMRYEDALETAEKALYDAIKIGDNI

Nucleotide


Download         Length: 360 bp        

>NTDB_id=222258 C2H94_RS16790 WP_249853170.1 3191402..3191761(-) (rapF) [Bacillus subtilis strain PK5_52]
ATGTATCATTTTAGAACGAGAGATTTAGTTATTGCTTTAACATATTATCGCGAAGCCGAAAAATATCTTGATTTATTAGA
TAAGAACGCAAATACAGATAAGGCAGAGTTCTATTTCAAAATGTCAGAAGTCTATTACTATATGAAAGAGACTCATTTTT
CAATGAATTATGCCCAGCGAGCATACTCTATATTTAAAGAACAAAAAGATGCTCAGGGGAACCTTACATATGGCAAGGAA
ATGGTCCAATGTCAGTTTTTTATCTTTGGGAACTTGCTAGATAAAATGCGTTATGAGGACGCTTTAGAAACAGCTGAAAA
AGCCTTATATGATGCTATAAAAATAGGGGACAACATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

40.741

90.756

0.37

Multiple sequence alignment