Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   B5D85_RS01485 Genome accession   NZ_CP020082
Coordinates   274160..274711 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB120304     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 269160..279711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D85_RS01485 (B5D85_01485) comX/sigX/comX2/sigX2 274160..274711 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  B5D85_RS01490 (B5D85_01490) - 275292..275819 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  B5D85_RS01495 (B5D85_01495) yqeH 275819..276937 (+) 1119 WP_011184178.1 ribosome biogenesis GTPase YqeH -
  B5D85_RS01500 (B5D85_01500) yhbY 276962..277270 (+) 309 WP_030127134.1 ribosome assembly RNA-binding protein YhbY -
  B5D85_RS01505 (B5D85_01505) - 277339..277971 (+) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  B5D85_RS01510 (B5D85_01510) yqeK 277968..278561 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  B5D85_RS01515 (B5D85_01515) rsfS 278585..278938 (+) 354 WP_015055915.1 ribosome silencing factor -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=220903 B5D85_RS01485 WP_010921894.1 274160..274711(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain STAB120304]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=220903 B5D85_RS01485 WP_010921894.1 274160..274711(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain STAB120304]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.