Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | Vp2S01_RS03185 | Genome accession | NZ_CP020034 |
| Coordinates | 602636..603064 (-) | Length | 142 a.a. |
| NCBI ID | WP_009698754.1 | Uniprot ID | A0A8B3DN92 |
| Organism | Vibrio parahaemolyticus strain 20130629002S01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 597636..608064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Vp2S01_RS03165 (Vp2S01_0544) | coaE | 598154..598768 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| Vp2S01_RS03170 (Vp2S01_0545) | pilD | 598769..599638 (-) | 870 | WP_031855539.1 | A24 family peptidase | Machinery gene |
| Vp2S01_RS03175 (Vp2S01_0546) | pilC | 599703..600926 (-) | 1224 | WP_023585959.1 | type II secretion system F family protein | Machinery gene |
| Vp2S01_RS03180 (Vp2S01_0547) | pilB | 600951..602636 (-) | 1686 | WP_031855538.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Vp2S01_RS03185 (Vp2S01_0548) | pilA | 602636..603064 (-) | 429 | WP_009698754.1 | pilin | Machinery gene |
| Vp2S01_RS03195 (Vp2S01_0549) | nadC | 603329..604216 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| Vp2S01_RS03200 (Vp2S01_0550) | ampD | 604309..604860 (+) | 552 | WP_025637088.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| Vp2S01_RS03205 (Vp2S01_0551) | pdhR | 605266..606033 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14524.57 Da Isoelectric Point: 5.7554
>NTDB_id=220579 Vp2S01_RS03185 WP_009698754.1 602636..603064(-) (pilA) [Vibrio parahaemolyticus strain 20130629002S01]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=220579 Vp2S01_RS03185 WP_009698754.1 602636..603064(-) (pilA) [Vibrio parahaemolyticus strain 20130629002S01]
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.951 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.294 |
100 |
0.38 |