Detailed information NTG0220576

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Vp2S01_RS03170
• Genome accession: NZ_CP020034
• Coordinates: 598769..599638 (-)
• Length: 289 a.a.
• NCBI ID: WP_031855539.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20130629002S01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 593769..604638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vp2S01_RS03135 (Vp2S01_0538)	rpsP	594753..595001 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
Vp2S01_RS03140 (Vp2S01_0539)	rimM	595030..595578 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
Vp2S01_RS03145 (Vp2S01_0540)	trmD	595606..596349 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
Vp2S01_RS03150 (Vp2S01_0541)	rplS	596391..596744 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
Vp2S01_RS03155 (Vp2S01_0542)	yacG	597123..597317 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
Vp2S01_RS03160 (Vp2S01_0543)	zapD	597386..598126 (-)	741	WP_023624252.1	cell division protein ZapD	-
Vp2S01_RS03165 (Vp2S01_0544)	coaE	598154..598768 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
Vp2S01_RS03170 (Vp2S01_0545)	pilD	598769..599638 (-)	870	WP_031855539.1	A24 family peptidase	Machinery gene
Vp2S01_RS03175 (Vp2S01_0546)	pilC	599703..600926 (-)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
Vp2S01_RS03180 (Vp2S01_0547)	pilB	600951..602636 (-)	1686	WP_031855538.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Vp2S01_RS03185 (Vp2S01_0548)	pilA	602636..603064 (-)	429	WP_009698754.1	pilin	Machinery gene
Vp2S01_RS03195 (Vp2S01_0549)	nadC	603329..604216 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1972

>NTDB_id=220576 Vp2S01_RS03170 WP_031855539.1 598769..599638(-) (pilD) [Vibrio parahaemolyticus strain 20130629002S01]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQEAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=220576 Vp2S01_RS03170 WP_031855539.1 598769..599638(-) (pilD) [Vibrio parahaemolyticus strain 20130629002S01]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGAAGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGGTGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45