Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BV139_RS02015 Genome accession   NZ_CP020012
Coordinates   419513..419962 (-) Length   149 a.a.
NCBI ID   WP_005686726.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 6P24H2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414513..424962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV139_RS01995 (BV139_407) rho 414900..416162 (+) 1263 WP_005648966.1 transcription termination factor Rho -
  BV139_RS02000 (BV139_408) pilD 416216..416908 (-) 693 WP_005686720.1 prepilin peptidase Machinery gene
  BV139_RS02005 (BV139_409) pilC 416905..418122 (-) 1218 WP_005686722.1 type II secretion system F family protein Machinery gene
  BV139_RS02010 (BV139_410) pilB 418119..419516 (-) 1398 WP_005686724.1 GspE/PulE family protein Machinery gene
  BV139_RS02015 (BV139_411) pilA 419513..419962 (-) 450 WP_005686726.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BV139_RS02020 (BV139_412) ampD 420077..420637 (+) 561 WP_005686728.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BV139_RS02025 (BV139_413) corC 421258..422157 (+) 900 WP_005656283.1 CNNM family magnesium/cobalt transport protein CorC -
  BV139_RS02030 (BV139_414) lnt 422180..423709 (+) 1530 WP_079995717.1 apolipoprotein N-acyltransferase -
  BV139_RS02035 (BV139_415) rsmE 423759..424496 (+) 738 WP_005686736.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15542.90 Da        Isoelectric Point: 8.4607

>NTDB_id=219968 BV139_RS02015 WP_005686726.1 419513..419962(-) (pilA) [Haemophilus influenzae strain 6P24H2]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNEATKCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQASGNAATGVTWTTTCKGTDASLFPANFCGSVTQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=219968 BV139_RS02015 WP_005686726.1 419513..419962(-) (pilA) [Haemophilus influenzae strain 6P24H2]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATCCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAGCAACAAAGTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCCAGTGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

97.987

100

0.98
  pilA Haemophilus influenzae Rd KW20

91.275

100

0.913
  pilA Glaesserella parasuis strain SC1401

54.362

100

0.544
  pilA2 Legionella pneumophila strain ERS1305867

42.446

93.289

0.396
  pilA2 Legionella pneumophila str. Paris

42.446

93.289

0.396
  pilA Vibrio campbellii strain DS40M4

39.716

94.631

0.376

Multiple sequence alignment