Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A9237_RS03740 Genome accession   NZ_CP019959
Coordinates   865028..865327 (-) Length   99 a.a.
NCBI ID   WP_078607704.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860028..870327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS03715 (A9237_03715) - 860492..861706 (+) 1215 WP_005437583.1 pyridoxal phosphate-dependent aminotransferase -
  A9237_RS03720 (A9237_03720) yfbR 861790..862374 (+) 585 WP_078607700.1 5'-deoxynucleotidase -
  A9237_RS03725 (A9237_03725) - 862378..863712 (+) 1335 WP_174575000.1 anti-phage deoxyguanosine triphosphatase -
  A9237_RS03730 (A9237_03730) - 863733..864350 (-) 618 WP_078607702.1 tRNA-uridine aminocarboxypropyltransferase -
  A9237_RS03735 (A9237_03735) rrtA 864354..864905 (+) 552 WP_078607703.1 rhombosortase -
  A9237_RS03740 (A9237_03740) comEA 865028..865327 (-) 300 WP_078607704.1 ComEA family DNA-binding protein Machinery gene
  A9237_RS03745 (A9237_03745) ppiD 865474..867333 (-) 1860 WP_078607705.1 peptidylprolyl isomerase -
  A9237_RS03750 (A9237_03750) - 867548..867820 (-) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10865.62 Da        Isoelectric Point: 7.9988

>NTDB_id=219178 A9237_RS03740 WP_078607704.1 865028..865327(-) (comEA) [Vibrio owensii strain XSBZ03]
MKWMLTLCLLLLAPMSWAEESKSATTKTAKYEGIEITVNVNTATAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTAADLS
KVKGIGEATVKKNQDRILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=219178 A9237_RS03740 WP_078607704.1 865028..865327(-) (comEA) [Vibrio owensii strain XSBZ03]
GTGAAATGGATGTTAACACTGTGCTTGCTGCTATTGGCGCCAATGAGCTGGGCGGAAGAAAGCAAGTCAGCAACGACAAA
AACGGCCAAGTATGAAGGCATTGAAATTACCGTTAATGTGAATACGGCTACCGCGGAAGAAATTGCGACACTATTGAATG
GTATTGGAACGAAAAAGGCGCAAGACATTGTTGAGTACCGCAACGAACATGGCCCATTTAAAACCGCAGCGGACTTAAGC
AAAGTGAAAGGCATTGGTGAAGCGACGGTGAAAAAGAACCAAGATCGCATCTTACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

83.838

100

0.838
  comEA Vibrio parahaemolyticus RIMD 2210633

73.737

100

0.737
  comEA Vibrio cholerae C6706

57.732

97.98

0.566
  comEA Vibrio cholerae strain A1552

57.732

97.98

0.566
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.495
  comEA/comE1 Glaesserella parasuis strain SC1401

39.252

100

0.424
  comEA Acinetobacter baumannii strain A118

30.894

100

0.384

Multiple sequence alignment