Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BWR56_RS08320 Genome accession   NZ_CP019562
Coordinates   1694300..1696279 (-) Length   659 a.a.
NCBI ID   WP_076984802.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689300..1701279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS08300 (BWR56_1646) amiF 1689795..1690724 (-) 930 WP_001291308.1 ATP-binding cassette domain-containing protein Regulator
  BWR56_RS08305 (BWR56_1647) amiE 1690735..1691802 (-) 1068 WP_076984801.1 ABC transporter ATP-binding protein Regulator
  BWR56_RS08310 (BWR56_1648) amiD 1691811..1692737 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  BWR56_RS08315 (BWR56_1649) amiC 1692737..1694233 (-) 1497 WP_049490242.1 ABC transporter permease Regulator
  BWR56_RS08320 (BWR56_1650) amiA 1694300..1696279 (-) 1980 WP_076984802.1 peptide ABC transporter substrate-binding protein Regulator
  BWR56_RS08330 (BWR56_1652) - 1696782..1698113 (-) 1332 WP_076984803.1 hemolysin family protein -
  BWR56_RS08335 (BWR56_1653) endA 1698249..1699073 (-) 825 WP_061587302.1 DNA/RNA non-specific endonuclease Machinery gene
  BWR56_RS08340 (BWR56_1654) - 1699114..1699308 (-) 195 WP_000739700.1 DNA-directed RNA polymerase subunit beta -
  BWR56_RS08345 (BWR56_1655) murA 1699295..1700578 (-) 1284 WP_033629306.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BWR56_RS08350 - 1700602..1700832 (-) 231 WP_076984804.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72764.96 Da        Isoelectric Point: 4.8748

>NTDB_id=216340 BWR56_RS08320 WP_076984802.1 1694300..1696279(-) (amiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
MKKSRVFVAAGIALLATGVLAACGSSKSSDSTAPKNYGYIYSADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHATDNKSEALYLAEDSVKGLADYKAGNNKDFASV
GVKAVDDYTLEYTLNKPEPYWNSKLAYSIFWPLNEDFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAFYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKDNIYYTPSGPGIAGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFERTSYSAQINGKEGAPLAVRNLFVKPGFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTNKGLIARIQSFKQSVETVLGEGNVVIDIQQISKDE
LHNITYYAANAAAEDWDLSGAVGWSPDYEDPSTYLDILKTTNSEQTKTYMGYDDPANAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=216340 BWR56_RS08320 WP_076984802.1 1694300..1696279(-) (amiA) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGAAAAAAAGTAGAGTATTTGTCGCAGCAGGAATTGCCCTATTAGCAACTGGCGTTTTAGCTGCTTGTGGTTCTTCAAA
ATCATCTGATTCTACAGCGCCAAAAAATTATGGCTATATTTATTCAGCTGACCCAGAAACTTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTTGCCACTTCAAATGGTATCGATGGTCTTTTCACAAACGACAAGTATGGGAACCTAGTCCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAGGGTGTCAAATGGATGAC
ATCAGATGGCGAAGAGTATGCTGAAGTGACAGCTAAAGACTTTGTAAATGGCTTGAAACACGCAACTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAACAATAAAGATTTTGCTTCAGTC
GGTGTAAAAGCAGTTGATGATTATACCCTTGAATACACTTTGAACAAACCAGAACCATACTGGAACTCTAAGCTAGCCTA
CTCAATCTTCTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGGGCTGACTTTGCCAAAGCAACTGACCCTACATCAT
TGCTTTACAATGGTCCGTTCTTACTGAAAGGTTTGACTGCTAAATCTTCTATTGAATTCGCTAAGAATGAAAATTACTGG
GACAAAGATAATGTTCACATTGATAAAGTAACCCTTGCTTTCTATGATGGATCAGACCAAGAGTCAATTGAACGTAACTT
TACAAGTGGAGCCTATAGCTATGCTCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATCTACTACACTCCATCAGGACCTGGTATTGCTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAAACAACTGATGAAGAGAAGACTTCTACCAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTCGCCTT
TGAGCGTACTTCTTACTCAGCACAAATTAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
GTTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTTAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCTAAGACTGCTTT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATTCCAGTTGACCAAACAAATAAGGGTCTTATTGCTCGTATTC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGTGAAGGAAACGTAGTCATTGATATTCAACAAATTTCTAAAGATGAG
TTGCACAATATCACATACTATGCCGCAAACGCTGCAGCAGAAGATTGGGATCTCTCAGGAGCAGTTGGATGGAGCCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACTAACAGCGAACAAACAAAAACTTACATGGGTTATGATG
ATCCAGCAAATGCAGCAGCTGCCCAAGTTGGTTTGAAGGAATACGATAAGTTAGTTGATGAAGCTGCAAAAGAAACCAAT
GACTTGAATGTGCGTTATGAAAAATATGCGGCTGCTCAAGCTTGGTTGACAGACAGCTCCCTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCACAGCATCATACAGCCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.134

100

0.681
  amiA3 Streptococcus thermophilus LMG 18311

67.727

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677

Multiple sequence alignment