Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BWR56_RS08310 Genome accession   NZ_CP019562
Coordinates   1691811..1692737 (-) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686811..1697737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS08290 (BWR56_1644) trkA 1686914..1688263 (+) 1350 WP_076984800.1 Trk system potassium transporter TrkA -
  BWR56_RS08295 (BWR56_1645) - 1688267..1689706 (+) 1440 WP_033629314.1 TrkH family potassium uptake protein -
  BWR56_RS08300 (BWR56_1646) amiF 1689795..1690724 (-) 930 WP_001291308.1 ATP-binding cassette domain-containing protein Regulator
  BWR56_RS08305 (BWR56_1647) amiE 1690735..1691802 (-) 1068 WP_076984801.1 ABC transporter ATP-binding protein Regulator
  BWR56_RS08310 (BWR56_1648) amiD 1691811..1692737 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  BWR56_RS08315 (BWR56_1649) amiC 1692737..1694233 (-) 1497 WP_049490242.1 ABC transporter permease Regulator
  BWR56_RS08320 (BWR56_1650) amiA 1694300..1696279 (-) 1980 WP_076984802.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=216338 BWR56_RS08310 WP_000103692.1 1691811..1692737(-) (amiD) [Streptococcus oralis strain S.MIT/ORALIS-351]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=216338 BWR56_RS08310 WP_000103692.1 1691811..1692737(-) (amiD) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACCGTCTTTATGCTAGGAATTTTGGTTGCCATTA
TTTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTTTCTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGATGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGAATTTGGGGTA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCATATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCACAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTATTCTGGATTCCATTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment