Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   BWR56_RS08315 Genome accession   NZ_CP019562
Coordinates   1692737..1694233 (-) Length   498 a.a.
NCBI ID   WP_049490242.1    Uniprot ID   A0A139Q478
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687737..1699233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS08295 (BWR56_1645) - 1688267..1689706 (+) 1440 WP_033629314.1 TrkH family potassium uptake protein -
  BWR56_RS08300 (BWR56_1646) amiF 1689795..1690724 (-) 930 WP_001291308.1 ATP-binding cassette domain-containing protein Regulator
  BWR56_RS08305 (BWR56_1647) amiE 1690735..1691802 (-) 1068 WP_076984801.1 ABC transporter ATP-binding protein Regulator
  BWR56_RS08310 (BWR56_1648) amiD 1691811..1692737 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  BWR56_RS08315 (BWR56_1649) amiC 1692737..1694233 (-) 1497 WP_049490242.1 ABC transporter permease Regulator
  BWR56_RS08320 (BWR56_1650) amiA 1694300..1696279 (-) 1980 WP_076984802.1 peptide ABC transporter substrate-binding protein Regulator
  BWR56_RS08330 (BWR56_1652) - 1696782..1698113 (-) 1332 WP_076984803.1 hemolysin family protein -
  BWR56_RS08335 (BWR56_1653) endA 1698249..1699073 (-) 825 WP_061587302.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55773.22 Da        Isoelectric Point: 9.2425

>NTDB_id=216339 BWR56_RS08315 WP_049490242.1 1692737..1694233(-) (amiC) [Streptococcus oralis strain S.MIT/ORALIS-351]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLIDIDHPNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPMGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=216339 BWR56_RS08315 WP_049490242.1 1692737..1694233(-) (amiC) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACCTTGACCTACACAATTAT
TTATACGATGGTTCCTCGAAAACTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAGAGCGAGC
ACAATGGACTCATCTGTAACAGTGGATGCCAATGATACCAATAAGGCAATCTATGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACACTCGGTGTGTTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTATTCCAACTTGATTGATATTGATCATCCAAACAAGATTCAAGACCCTGAAAATCCAAACTTGCAACGTTATCTT
CGTTTTGAAAATGATCCTGCTATTGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATACCTTTTGTATTTCAACAA
TCAATTCCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGATTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTATGGGTAAAAAGACTTCATCTGTA
GATATTTACTCTCGTACCTACAAATCTCCAAGTCAAGCAGATGCGCGTGAAGTAGCCAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTACCAATATCCATCAATGATTGCAAGCTCAGCGGTTGCTGGTTTGATCGGTTTGATTATTT
CGTATGCGATTGCGATTCCACTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTTTACATCGTTCGTTTGATTGGTTCATCTATTGGTCTGCCTGA
CTCATTCCCTATTTTGGGTGCTGGAGATTGGCGTTCTTATGTCTTGCCAGCAGTCATTCTAGGTTTGCTGGGTGCACCAA
GTACAGCTATCTGGATTCGTCGTTACATGATTGACTTGCAATCCCAGGACTTTGTACGTTTTGCTCGTGCTAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCATTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTTACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGATCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139Q478

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.506

100

0.765
  amiC Streptococcus thermophilus LMG 18311

75.904

100

0.759
  amiC Streptococcus thermophilus LMD-9

75.703

100

0.757

Multiple sequence alignment