Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   BWR56_RS08300 Genome accession   NZ_CP019562
Coordinates   1689795..1690724 (-) Length   309 a.a.
NCBI ID   WP_001291308.1    Uniprot ID   A0A081R280
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684795..1695724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS08275 (BWR56_1641) - 1685018..1685581 (-) 564 WP_076984797.1 ECF transporter S component -
  BWR56_RS08280 (BWR56_1642) - 1686010..1686513 (-) 504 WP_076984798.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  BWR56_RS08290 (BWR56_1644) trkA 1686914..1688263 (+) 1350 WP_076984800.1 Trk system potassium transporter TrkA -
  BWR56_RS08295 (BWR56_1645) - 1688267..1689706 (+) 1440 WP_033629314.1 TrkH family potassium uptake protein -
  BWR56_RS08300 (BWR56_1646) amiF 1689795..1690724 (-) 930 WP_001291308.1 ATP-binding cassette domain-containing protein Regulator
  BWR56_RS08305 (BWR56_1647) amiE 1690735..1691802 (-) 1068 WP_076984801.1 ABC transporter ATP-binding protein Regulator
  BWR56_RS08310 (BWR56_1648) amiD 1691811..1692737 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  BWR56_RS08315 (BWR56_1649) amiC 1692737..1694233 (-) 1497 WP_049490242.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35067.28 Da        Isoelectric Point: 7.0424

>NTDB_id=216336 BWR56_RS08300 WP_001291308.1 1689795..1690724(-) (amiF) [Streptococcus oralis strain S.MIT/ORALIS-351]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKKALKE

Nucleotide


Download         Length: 930 bp        

>NTDB_id=216336 BWR56_RS08300 WP_001291308.1 1689795..1690724(-) (amiF) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTTGCGGTTAAAAA
CGCCAACTTCTTTATCAATAAGGGAGAAACATTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTTTAAATAATACTAGTAAAGGTGAAATCATCTTTGATGGTCATAAAATTAATGGGAAAAAATCTCATAAG
GAATCATCAGACTTGATCCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCGACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTTAAAGATGAAGAGGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTACCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAGCCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTATCAGTACGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGATTGACTTATCTCTTCATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTAATCGTCGAGGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAAGCACTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGATAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCCAATCAAGCAGAACTTGCTCGTTACAAGAAAGCTCTTAAAGAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R280

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

86.23

98.706

0.851
  amiF Streptococcus thermophilus LMG 18311

85.246

98.706

0.841
  amiF Streptococcus thermophilus LMD-9

84.918

98.706

0.838

Multiple sequence alignment