Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BZG42_RS03215 Genome accession   NZ_CP019557
Coordinates   656581..657192 (+) Length   203 a.a.
NCBI ID   WP_227984907.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 651581..662192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS03200 (BZG42_03220) - 652513..653769 (+) 1257 WP_155995328.1 MalY/PatB family protein -
  BZG42_RS03205 (BZG42_03225) - 654019..655635 (+) 1617 WP_155995329.1 alpha-glucosidase -
  BZG42_RS03210 (BZG42_03230) upp 655715..656344 (+) 630 WP_024533020.1 uracil phosphoribosyltransferase -
  BZG42_RS03215 (BZG42_03235) clpP 656581..657192 (+) 612 WP_227984907.1 ATP-dependent Clp protease proteolytic subunit Regulator
  BZG42_RS03220 (BZG42_03240) - 657330..657599 (+) 270 WP_155995330.1 YlbG family protein -
  BZG42_RS03225 (BZG42_03245) - 657742..658914 (+) 1173 WP_155995331.1 ABC transporter substrate-binding protein -
  BZG42_RS03230 (BZG42_03250) - 659182..660069 (+) 888 WP_024533024.1 branched-chain amino acid ABC transporter permease -
  BZG42_RS03235 (BZG42_03255) - 660072..661019 (+) 948 WP_155995332.1 branched-chain amino acid ABC transporter permease -
  BZG42_RS03240 (BZG42_03260) - 661019..661783 (+) 765 WP_024533026.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22310.68 Da        Isoelectric Point: 6.8832

>NTDB_id=216216 BZG42_RS03215 WP_227984907.1 656581..657192(+) (clpP) [Streptococcus sp. DAT741]
MSKRSNFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDHAKVK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=216216 BZG42_RS03215 WP_227984907.1 656581..657192(+) (clpP) [Streptococcus sp. DAT741]
ATCTCGAAAAGGAGTAATTTTATGATTCCAGTAGTTATTGAACAAACCAGTCGAGGTGAGCGTTCGTATGATATTTATTC
TCGCTTGCTGAAAGACCGAATTATCATGTTGACAGGACCAGTTGAAGACAATATGGCAAACTCAGTCATTGCTCAGTTGC
TTTTCCTCGATGCTCAAGACCCTACAAAGGATATTTATTTGTATGTGAACACCCCAGGTGGATCTGTGTCAGCAGGACTT
GCTATTGTAGACACGATGAATTTTATCAAGGCAGATGTCCAAACAATTGTGATGGGAACTGCTGCAAGTATGGGAACTGT
TATCGCATCAAGTGGTGCTAAGGGTAAGCGTTTTATGCTTCCAAATGCAGAGTATATGATTCACCAGCCAATGGGTGGTA
CTGGTGGCGGTACTCAGCAGACAGATATGGCCATTGCTGCAGAACATTTGCTGAAAACACGCAATAAATTAGAGAAAATC
TTAGCTGATAATTCGGGTAAAACAGTGAAGCAAATCCACAAGGATGCAGAACGTGATTATTGGATGTCAGCAGAAGAAAC
CTTGGCCTATGGCTTTATTGACCAAATTATGGATCATGCAAAGGTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(18-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.857

96.552

0.897
  clpP Streptococcus pyogenes MGAS315

92.857

96.552

0.897
  clpP Streptococcus pneumoniae R6

92.105

93.596

0.862
  clpP Streptococcus pneumoniae Rx1

92.105

93.596

0.862
  clpP Streptococcus pneumoniae D39

92.105

93.596

0.862
  clpP Streptococcus pneumoniae TIGR4

92.105

93.596

0.862
  clpP Streptococcus mutans UA159

88.776

96.552

0.857
  clpP Streptococcus thermophilus LMG 18311

87.245

96.552

0.842
  clpP Streptococcus thermophilus LMD-9

87.245

96.552

0.842
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

82.234

97.044

0.798
  clpP Lactococcus lactis subsp. cremoris KW2

81.726

97.044

0.793
  clpP Bacillus subtilis subsp. subtilis str. 168

57.653

96.552

0.557
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

95.074

0.552

Multiple sequence alignment