Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   BZG42_RS00795 Genome accession   NZ_CP019557
Coordinates   121515..122546 (+) Length   343 a.a.
NCBI ID   WP_155995580.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116515..127546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS00780 (BZG42_00755) - 119127..119495 (+) 369 WP_155972340.1 DUF1033 family protein -
  BZG42_RS00785 (BZG42_00760) - 119533..120483 (-) 951 WP_024532257.1 S66 peptidase family protein -
  BZG42_RS00790 (BZG42_00765) comYA 120644..121594 (+) 951 WP_155962599.1 competence type IV pilus ATPase ComGA Machinery gene
  BZG42_RS00795 (BZG42_00770) comYB 121515..122546 (+) 1032 WP_155995580.1 competence type IV pilus assembly protein ComGB Machinery gene
  BZG42_RS00800 (BZG42_00775) comYC 122543..122824 (+) 282 WP_024532254.1 competence type IV pilus major pilin ComGC Machinery gene
  BZG42_RS00805 (BZG42_00780) comGD 122811..123224 (+) 414 WP_155995578.1 competence type IV pilus minor pilin ComGD -
  BZG42_RS00810 (BZG42_00785) comYE 123196..123489 (+) 294 WP_155995576.1 competence type IV pilus minor pilin ComGE Machinery gene
  BZG42_RS00815 (BZG42_00790) comGF/cglF 123476..123910 (+) 435 WP_024532251.1 competence type IV pilus minor pilin ComGF Machinery gene
  BZG42_RS00820 (BZG42_00795) comGG 123888..124301 (+) 414 WP_120171207.1 competence type IV pilus minor pilin ComGG -
  BZG42_RS00825 (BZG42_00800) comYH 124306..125259 (+) 954 WP_155995574.1 class I SAM-dependent methyltransferase Machinery gene
  BZG42_RS00830 (BZG42_00805) - 125309..126496 (+) 1188 WP_024532248.1 acetate kinase -
  BZG42_RS00835 (BZG42_00810) - 126801..127355 (+) 555 WP_024532247.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 39027.98 Da        Isoelectric Point: 9.0595

>NTDB_id=216199 BZG42_RS00795 WP_155995580.1 121515..122546(+) (comYB) [Streptococcus sp. DAT741]
MIAFLQQDISVIDRQRQKKLSLDHQRKVIELFNNLFASGFHLGEIVDFLRRSQLLADRYTQVLSDGLLAGKPFSSLLADL
RFSDAVVTQVSLAEVHGNTSLSLFHIQSYLENVSKIRKKLIKVATYPVILLAFLLLIVVGLKNYLLPQLEEENIATVLIN
HLPAIFLSVVFLLSVGVLAGLTCYRKASKIKVFSRLVALPFLGKVIQTYLTAYYAREWGSLIGQGLEMPQIVELMQTQRS
QLFREIGEDLESALSNGQSFHYHIQSYPFFKRELSLIIEYGQVKSKLGSELALYAAECWEEFFSRVNRAMQLIQPLVFLF
VALMVVLIYAAMLLPIYQNMELK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=216199 BZG42_RS00795 WP_155995580.1 121515..122546(+) (comYB) [Streptococcus sp. DAT741]
TTGATAGCCTTTTTGCAGCAGGATATATCAGTCATAGACAGGCAGAGACAGAAAAAATTGTCTTTGGATCACCAGCGTAA
GGTGATTGAATTATTTAACAATCTCTTTGCAAGTGGTTTTCATTTGGGAGAAATTGTGGATTTTCTCAGGCGTAGTCAGC
TCCTGGCGGACCGTTACACACAGGTTTTATCAGATGGACTGTTGGCTGGTAAACCATTTTCTAGCCTTCTAGCGGATCTT
CGTTTTTCGGATGCTGTTGTCACTCAGGTTTCTCTTGCAGAAGTTCATGGTAATACTAGTTTGAGTCTGTTCCACATACA
GTCCTATCTGGAAAATGTCAGTAAAATCCGTAAAAAATTGATCAAGGTTGCCACTTATCCAGTCATTTTACTGGCTTTTC
TTCTCCTGATTGTAGTAGGCTTGAAAAACTATCTCTTGCCGCAATTGGAAGAAGAAAACATAGCAACGGTGTTGATTAAC
CACTTACCAGCTATTTTTTTATCCGTAGTTTTCTTATTATCGGTAGGAGTTTTAGCAGGTCTTACTTGCTATCGCAAAGC
GAGCAAAATCAAGGTCTTTTCACGCTTGGTTGCTTTGCCATTTTTGGGAAAAGTTATCCAAACCTATCTAACAGCGTATT
ATGCTAGGGAGTGGGGAAGTCTAATCGGTCAGGGCTTAGAAATGCCACAGATTGTGGAGTTGATGCAGACACAGCGGTCG
CAATTATTCAGAGAGATTGGAGAAGATTTAGAATCAGCTCTTTCAAATGGTCAGAGCTTCCATTATCATATTCAGTCCTA
TCCATTTTTCAAGCGAGAGTTGAGTTTGATTATTGAGTATGGACAAGTCAAATCCAAACTGGGAAGCGAGTTGGCATTGT
ATGCAGCGGAGTGTTGGGAAGAATTTTTCTCCCGAGTCAATAGGGCCATGCAGTTGATTCAACCGCTAGTCTTTCTCTTT
GTAGCCTTGATGGTCGTTCTTATCTACGCAGCCATGTTGCTGCCTATTTATCAGAATATGGAGTTAAAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(30-147)

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.158

99.708

0.63
  comGB/cglB Streptococcus mitis NCTC 12261

61.012

97.959

0.598
  comYB Streptococcus mutans UA159

58.43

100

0.586
  comYB Streptococcus mutans UA140

58.43

100

0.586
  comGB/cglB Streptococcus pneumoniae Rx1

59.821

97.959

0.586
  comGB/cglB Streptococcus pneumoniae R6

59.821

97.959

0.586
  comGB/cglB Streptococcus pneumoniae TIGR4

59.821

97.959

0.586
  comGB/cglB Streptococcus pneumoniae D39

59.821

97.959

0.586
  comGB/cglB Streptococcus mitis SK321

59.524

97.959

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

49.852

98.251

0.49

Multiple sequence alignment