Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BST95_RS03915 Genome accession   NZ_CP019450
Coordinates   817699..819600 (+) Length   633 a.a.
NCBI ID   WP_338073403.1    Uniprot ID   -
Organism   Halioglobus japonicus strain NBRC 107739     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 812699..824600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST95_RS03895 (BST95_03920) pilM 814641..815705 (+) 1065 WP_066057213.1 pilus assembly protein PilM Machinery gene
  BST95_RS03900 (BST95_03925) - 815705..816274 (+) 570 WP_084198240.1 PilN domain-containing protein -
  BST95_RS03905 (BST95_03930) - 816277..816894 (+) 618 WP_084198241.1 type 4a pilus biogenesis protein PilO -
  BST95_RS03910 (BST95_03935) - 816898..817428 (+) 531 WP_084198242.1 pilus assembly protein PilP -
  BST95_RS03915 (BST95_03940) pilQ 817699..819600 (+) 1902 WP_338073403.1 type IV pilus secretin PilQ family protein Machinery gene
  BST95_RS03920 (BST95_03945) aroK 819600..820115 (+) 516 WP_082850170.1 shikimate kinase AroK -
  BST95_RS03925 (BST95_03950) aroB 820183..821271 (+) 1089 WP_084201037.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 68667.51 Da        Isoelectric Point: 4.2248

>NTDB_id=215894 BST95_RS03915 WP_338073403.1 817699..819600(+) (pilQ) [Halioglobus japonicus strain NBRC 107739]
MDFPGASSKLERKRYSLPYGNATGVVVLESGDRTRMVVNLVKLVPYETRVEGNSMYLVVGQDGDDYLKPASDPNRLPTEV
TPVADVDSEISDLQFQRTADGEGRLTLALTDPSVDVNVFSEAGDIKLQFVDTNVPERLMRRFDVTDFATPVQSVDVNTTE
RGATLTLKTAGDFDYLAYQTNNEYVLSVKPLTLKEVEERRNEFAYVGDRISLNFQDIEVRAVLQLIADFTEMNLVASDTV
RGRITLRLQNVPWDQALELVLKTKGLDKRMIGNVLMVAPAAEIAERERQEIEANKQIAELAPLVSEFVRIRYAKASDVTK
LFQAGSEEGGSLISSRGSVVVDARTNSLIITDTANKMQEIRDLIELVDIPVRQVMIESRIVIAQSDLTHNLGIEWGGGYI
EPDLNGNIGSISGDTANVAALNQSIINGTTPSVSYPGALLVDLGVASTSGFAVGFTSDDLFLTAELSALEAAGEGEVVSQ
PKVITGDKQQANIKSGTEIPYQEASASGATSTSFKEAVLELDVTPSITPDDRIMLDLVIKQDSVGELVPSGRGGFIPSID
TTELNSQVLVGNGETVVLGGVFKTEDLESVNKVPFFGDIPYVGAFFRSTSISKTKTETLIFITPKILADTLLD

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=215894 BST95_RS03915 WP_338073403.1 817699..819600(+) (pilQ) [Halioglobus japonicus strain NBRC 107739]
ATGGATTTCCCCGGCGCGAGCTCTAAGCTGGAGCGCAAGCGCTACTCCCTGCCCTATGGTAATGCCACGGGTGTGGTGGT
GCTGGAGTCCGGCGATCGCACCCGCATGGTGGTGAACCTGGTCAAGCTGGTGCCCTACGAGACGCGTGTTGAGGGCAACA
GCATGTACCTGGTGGTTGGCCAGGACGGCGACGATTATCTCAAGCCTGCCTCCGATCCGAATCGATTGCCCACTGAGGTG
ACCCCGGTGGCTGATGTGGACTCAGAAATCAGCGATTTGCAATTCCAGCGTACGGCTGACGGCGAGGGCCGTCTGACCCT
GGCGCTGACCGACCCTTCGGTGGACGTGAACGTGTTCAGCGAGGCGGGCGATATCAAGCTGCAGTTTGTCGACACCAATG
TGCCCGAACGACTGATGCGCCGCTTTGATGTGACCGACTTTGCTACACCGGTGCAGAGTGTGGACGTCAATACCACTGAG
CGCGGCGCGACGCTGACACTGAAGACGGCCGGTGATTTCGATTACCTGGCCTACCAGACGAACAACGAGTATGTGCTGAG
TGTGAAGCCCCTGACCCTGAAAGAGGTTGAGGAGCGTCGCAACGAGTTCGCCTATGTGGGCGACCGGATCTCCCTGAACT
TCCAGGATATTGAAGTGCGCGCGGTACTGCAGTTGATTGCCGACTTCACGGAAATGAACCTGGTGGCCAGTGACACGGTG
CGCGGTCGTATTACCCTGCGTCTGCAGAATGTGCCCTGGGACCAGGCACTGGAGCTGGTGCTGAAGACCAAGGGCCTGGA
TAAGCGCATGATCGGCAATGTACTCATGGTGGCTCCGGCGGCTGAGATCGCCGAGCGCGAGCGCCAGGAGATTGAAGCGA
ATAAGCAGATCGCCGAACTTGCACCGCTCGTGTCCGAGTTTGTCCGCATCCGTTACGCCAAGGCCAGTGACGTTACCAAG
TTGTTCCAGGCCGGCTCCGAAGAAGGCGGCAGCCTGATCTCGTCTCGCGGCTCGGTGGTTGTCGATGCGCGTACCAACTC
ACTGATCATTACCGATACTGCCAACAAGATGCAGGAGATTCGCGACCTGATTGAGCTGGTCGATATCCCGGTACGCCAGG
TCATGATTGAGTCCCGTATTGTGATCGCCCAGTCCGACCTGACCCATAACCTGGGTATTGAGTGGGGCGGCGGCTACATC
GAGCCTGACCTGAATGGCAATATTGGCTCGATCTCCGGTGATACGGCCAACGTGGCTGCGCTCAACCAGTCCATCATCAA
CGGTACGACGCCTAGTGTGTCCTACCCGGGTGCCCTGCTGGTTGACCTGGGTGTGGCCAGTACCAGTGGCTTTGCGGTGG
GCTTCACCAGTGACGACCTGTTCCTGACAGCGGAGCTGTCAGCCCTGGAAGCGGCCGGTGAAGGTGAAGTGGTCTCCCAG
CCGAAGGTTATTACCGGCGACAAGCAGCAGGCCAATATCAAGTCGGGTACCGAGATTCCCTACCAGGAAGCTTCTGCCTC
CGGTGCGACATCGACTTCCTTTAAGGAAGCGGTACTGGAGCTGGATGTGACCCCAAGTATTACCCCGGACGATCGCATCA
TGCTCGACCTGGTGATCAAGCAGGATTCCGTGGGCGAGCTCGTGCCCTCCGGTCGCGGCGGTTTTATCCCCTCGATTGAT
ACAACGGAACTGAACAGCCAGGTGCTGGTAGGCAATGGCGAGACGGTTGTGCTCGGCGGTGTCTTCAAGACCGAAGATCT
GGAATCCGTGAACAAGGTGCCGTTCTTTGGAGACATTCCCTACGTGGGCGCGTTCTTCCGCAGCACCTCGATTTCCAAGA
CCAAGACAGAGACCCTGATCTTCATCACGCCGAAGATTCTCGCGGACACTCTGCTCGACTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(307-373)

Secretin and TonB N terminus short domain (STN)

(233-279)

Bacterial type II and III secretion system protein (Secretin)

(468-627)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

47.604

100

0.487
  pilQ Acinetobacter baumannii D1279779

40.835

100

0.433
  pilQ Acinetobacter baumannii strain A118

40.835

100

0.433
  comQ Acinetobacter baylyi ADP1

40.393

100

0.422
  pilQ Legionella pneumophila strain Lp02

38.231

100

0.382
  pilQ Legionella pneumophila strain ERS1305867

38.217

99.21

0.379

Multiple sequence alignment