Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BWP33_RS02315 Genome accession   NZ_CP019448
Coordinates   476760..478253 (+) Length   497 a.a.
NCBI ID   WP_002640981.1    Uniprot ID   V9HMS9
Organism   Simonsiella muelleri ATCC 29453     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 471760..483253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP33_RS02290 (BWP33_02295) recX 472189..472656 (+) 468 WP_002640986.1 recombination regulator RecX Regulator
  BWP33_RS02295 (BWP33_02300) deoD 472809..473519 (-) 711 WP_002640985.1 purine-nucleoside phosphorylase -
  BWP33_RS02300 (BWP33_02305) - 473538..474362 (-) 825 WP_002640984.1 undecaprenyl-diphosphate phosphatase -
  BWP33_RS02305 (BWP33_02310) - 474559..475257 (-) 699 WP_002640983.1 thiol:disulfide interchange protein DsbA/DsbL -
  BWP33_RS02310 (BWP33_02315) - 475322..476461 (-) 1140 WP_002640982.1 SPOR domain-containing protein -
  BWP33_RS13095 - 476482..476613 (+) 132 WP_263479606.1 hypothetical protein -
  BWP33_RS02315 (BWP33_02320) comM 476760..478253 (+) 1494 WP_002640981.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BWP33_RS02320 (BWP33_02325) - 478417..478929 (+) 513 WP_002640980.1 protein disulfide oxidoreductase -
  BWP33_RS02325 (BWP33_02330) - 479036..481243 (-) 2208 WP_002640979.1 UvrD-helicase domain-containing protein -
  BWP33_RS02330 (BWP33_02335) - 481397..481609 (+) 213 WP_002640978.1 hypothetical protein -
  BWP33_RS02335 (BWP33_02340) - 481707..483206 (+) 1500 WP_002640977.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54215.98 Da        Isoelectric Point: 7.1362

>NTDB_id=215859 BWP33_RS02315 WP_002640981.1 476760..478253(+) (comM) [Simonsiella muelleri ATCC 29453]
MTFSVINSRALSGMDAPLVEVETHLANGLPQFNIVGLPDTEVKESRDRVRAAIIQSGFEFPTQKITVNLAPADLPKESGR
FDLPIAIGILVASGQILANNLEQYEFAGELALSGKLRPIRGAFAMAWQGQQAGHAFVLPNENAQQVAIMSHIEAYGADSL
AAIVSHLNGMENLPRATPVVFRQPENMQSPDLKDVKGQHTARLALEIAAAGGHSLLMIGPPGTGKSMLAQRLPSILPPLS
ADEQIEVWALRSLLPQYMQDFSTQRPFRQVHNSSSSAALVGGGSDPRPGEISLANHGVLFLDELPEFDRKVLEMLRDPLE
SGVIHISRVARQVTYPAKFQLVAAMNPCPCGYFGHATKPCRCTPDSVKRYRDKISGPLLDRIDLTIEVPALSTSDLTQTQ
AGESSADVLQRVLAAREYQQKRQNKINAKLTSHELDTLANISDDAKQSLAQMLDKLSLSARSYHRILRVARTLADLSGDE
TVERAHVLRAVSFRRAL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=215859 BWP33_RS02315 WP_002640981.1 476760..478253(+) (comM) [Simonsiella muelleri ATCC 29453]
ATGACATTTTCTGTAATTAATAGCCGCGCTTTAAGTGGTATGGATGCACCACTTGTGGAAGTTGAGACACACTTGGCCAA
TGGATTGCCGCAATTTAACATCGTAGGTTTGCCCGATACCGAAGTGAAAGAAAGCCGCGACCGTGTTCGTGCCGCAATTA
TTCAAAGTGGGTTTGAATTTCCCACGCAAAAAATCACCGTGAATCTTGCGCCTGCTGATTTACCAAAAGAGTCAGGGCGT
TTTGATTTGCCGATTGCGATTGGGATTTTGGTGGCATCAGGGCAAATTTTGGCAAATAATCTTGAACAATATGAATTTGC
TGGCGAATTGGCTTTGTCAGGTAAATTGCGTCCCATTCGTGGTGCATTTGCGATGGCTTGGCAAGGACAACAAGCAGGTC
ATGCGTTTGTTTTGCCAAATGAAAATGCCCAACAAGTGGCGATTATGTCGCACATTGAAGCGTATGGTGCAGACAGTTTG
GCGGCGATTGTTTCGCATTTAAATGGTATGGAAAATTTGCCACGTGCTACGCCTGTGGTTTTCAGGCAGCCTGAAAATAT
GCAATCGCCTGATTTAAAAGATGTTAAAGGGCAACATACAGCACGTTTGGCTTTGGAGATTGCGGCGGCTGGCGGGCACA
GTTTGTTGATGATTGGGCCGCCAGGGACGGGTAAATCCATGTTGGCGCAACGGTTACCGAGCATTTTGCCGCCATTGAGC
GCAGATGAACAAATTGAAGTGTGGGCGTTGCGTTCGTTGCTACCGCAATATATGCAGGATTTCAGCACACAACGACCGTT
TCGCCAGGTGCATAATTCCAGCAGTTCAGCGGCGTTGGTGGGCGGTGGTTCTGACCCACGTCCAGGGGAAATTTCGTTGG
CAAATCATGGTGTTTTGTTTTTAGATGAATTGCCTGAATTTGACCGAAAAGTATTGGAGATGTTACGCGATCCGTTGGAA
AGTGGCGTGATTCATATTTCACGTGTGGCACGCCAAGTAACATATCCTGCTAAATTTCAATTGGTTGCAGCGATGAATCC
GTGTCCGTGCGGTTATTTTGGACACGCGACCAAACCATGTCGGTGTACGCCTGATAGTGTGAAACGGTATCGCGATAAAA
TTTCGGGTCCTTTGTTGGATCGAATTGATTTAACAATAGAAGTACCTGCGCTTTCTACGTCTGATTTGACGCAAACGCAA
GCGGGTGAAAGCAGTGCAGACGTGTTGCAACGTGTGTTGGCGGCACGTGAATATCAGCAAAAAAGACAGAATAAAATCAA
TGCCAAACTCACTTCTCATGAATTGGACACGTTGGCGAATATTTCGGACGATGCGAAACAATCTTTGGCGCAAATGTTGG
ATAAATTATCTTTATCTGCAAGAAGTTACCACAGAATTTTGCGTGTAGCACGAACATTGGCAGATTTATCGGGCGATGAA
ACGGTGGAACGCGCCCATGTTTTACGTGCTGTCAGTTTCAGGCGTGCTTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9HMS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.602

100

0.507
  comM Haemophilus influenzae Rd KW20

49.098

100

0.493
  comM Glaesserella parasuis strain SC1401

48.4

100

0.487
  comM Vibrio campbellii strain DS40M4

48.2

100

0.485
  comM Legionella pneumophila str. Paris

45.635

100

0.463
  comM Legionella pneumophila strain ERS1305867

45.635

100

0.463
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.461

100

0.435

Multiple sequence alignment