Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CVO91_RS11835 Genome accession   NZ_CP024974
Coordinates   2340174..2340623 (-) Length   149 a.a.
NCBI ID   WP_100664952.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2335174..2345623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS11820 (CVO91_11820) - 2335665..2336459 (+) 795 WP_100664949.1 formate/nitrite transporter family protein -
  CVO91_RS11825 (CVO91_11825) - 2336548..2338332 (-) 1785 WP_100664950.1 ABC transporter ATP-binding protein -
  CVO91_RS11830 (CVO91_11830) - 2338472..2340181 (-) 1710 WP_100664951.1 ABC transporter ATP-binding protein -
  CVO91_RS11835 (CVO91_11835) rcrR 2340174..2340623 (-) 450 WP_100664952.1 MarR family transcriptional regulator Regulator
  CVO91_RS11840 (CVO91_11840) - 2340849..2341865 (+) 1017 WP_100664953.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CVO91_RS11845 (CVO91_11845) galU 2341884..2342783 (+) 900 WP_100664954.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CVO91_RS11850 (CVO91_11850) - 2342818..2343495 (-) 678 WP_100664955.1 rhomboid family intramembrane serine protease -
  CVO91_RS11855 (CVO91_11855) - 2343479..2344021 (-) 543 WP_100664956.1 5-formyltetrahydrofolate cyclo-ligase -
  CVO91_RS11860 (CVO91_11860) - 2344063..2345190 (-) 1128 WP_100664957.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17240.79 Da        Isoelectric Point: 7.1174

>NTDB_id=215858 CVO91_RS11835 WP_100664952.1 2340174..2340623(-) (rcrR) [Streptococcus suis strain CZ130302]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALLFMSERVDGETFVKDIEAELCISKSVASNLVKRMEKNGFIQ
VISSQVDKRYKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=215858 CVO91_RS11835 WP_100664952.1 2340174..2340623(-) (rcrR) [Streptococcus suis strain CZ130302]
TTGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATACGA
TGTGGAGCACTTAGCCGGTCCACAGGGTTGGGCCTTACTCTTTATGTCGGAGCGGGTAGACGGTGAGACCTTTGTCAAAG
ACATCGAAGCAGAGCTTTGTATTTCCAAATCAGTAGCCAGTAACCTGGTCAAGCGAATGGAGAAAAACGGCTTTATCCAG
GTCATATCTTCACAAGTTGACAAACGCTATAAGCAGTTGGTTTTGACAGAGAAAGGACAAGGGAAAATCTGTCACCTGAA
AGCCTTCCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGATTTGGTTAAACAGGTGGGCA
ATCAGTTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(36-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

44.366

95.302

0.423

Multiple sequence alignment