Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AJGP001_RS17220 Genome accession   NZ_CP019401
Coordinates   3480650..3481123 (-) Length   157 a.a.
NCBI ID   WP_008497641.1    Uniprot ID   A0AAI9WAF2
Organism   Planococcus faecalis strain AJ003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3475650..3486123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJGP001_RS17200 (AJGP001_17245) rplI 3476763..3477212 (-) 450 WP_058383869.1 50S ribosomal protein L9 -
  AJGP001_RS17205 (AJGP001_17250) - 3477209..3479185 (-) 1977 WP_071152946.1 DHH family phosphoesterase -
  AJGP001_RS17210 (AJGP001_17255) - 3479200..3480159 (-) 960 WP_071152947.1 YybS family protein -
  AJGP001_RS17215 (AJGP001_17260) rpsR 3480364..3480600 (-) 237 WP_006830564.1 30S ribosomal protein S18 -
  AJGP001_RS17220 (AJGP001_17265) ssbA 3480650..3481123 (-) 474 WP_008497641.1 single-stranded DNA-binding protein Machinery gene
  AJGP001_RS17225 (AJGP001_17270) rpsF 3481174..3481461 (-) 288 WP_058383866.1 30S ribosomal protein S6 -
  AJGP001_RS17230 (AJGP001_17275) - 3481641..3482198 (+) 558 WP_071152948.1 DUF3267 domain-containing protein -
  AJGP001_RS17235 (AJGP001_17280) - 3482216..3482596 (-) 381 WP_058383864.1 gamma-glutamylcyclotransferase family protein -
  AJGP001_RS17240 (AJGP001_17285) ychF 3482950..3484050 (-) 1101 WP_058386809.1 redox-regulated ATPase YchF -
  AJGP001_RS17245 (AJGP001_17290) - 3484139..3484339 (-) 201 WP_058383863.1 DUF951 domain-containing protein -
  AJGP001_RS17250 (AJGP001_17295) - 3484355..3485245 (-) 891 WP_078080805.1 mechanosensitive ion channel family protein -
  AJGP001_RS17255 (AJGP001_17300) - 3485264..3485977 (-) 714 WP_058383862.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17301.93 Da        Isoelectric Point: 4.9561

>NTDB_id=215268 AJGP001_RS17220 WP_008497641.1 3480650..3481123(-) (ssbA) [Planococcus faecalis strain AJ003]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGERETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKSANTDRSQGQQPSYQQNQSPSPSQQNHTRVDEDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=215268 AJGP001_RS17220 WP_008497641.1 3480650..3481123(-) (ssbA) [Planococcus faecalis strain AJ003]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCAGACCTTCGTTACACACCAAGCGGCGCGGCAGTTGC
TCGTTTTACACTTGCTGTAAATCGGACTTTCTCCAACGCTCAAGGTGAACGCGAAACGGATTTCATTAATTGTACTGTTT
GGCGCAAACAAGCTGAAAATACAGCGAACTTCCTGAAAAAAGGAAGCTTGGCTGGTGTTGAAGGCCGCATCCAGACTGGT
AGCTACGAGGGACAAGACGGGAAACGCGTCTATACAACAGAAGTAGTAGCGGACAGTGTTCAATTCCTTGAACCGAAAAG
CGCTAATACGGATCGTTCACAAGGGCAGCAGCCTTCCTATCAACAGAACCAATCACCGAGCCCAAGTCAGCAAAACCATA
CTCGTGTAGATGAAGATCCATTCTCAAGCGGTAGCGGTCCGATCGAAGTATCGGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.656
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

67.516

0.459
  ssb Neisseria gonorrhoeae MS11

36.207

100

0.401
  ssb Neisseria meningitidis MC58

35.465

100

0.389
  ssb Vibrio cholerae strain A1552

33.333

100

0.382

Multiple sequence alignment