Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BTM29_RS05535 | Genome accession | NZ_CP019323 |
| Coordinates | 1148981..1149448 (+) | Length | 155 a.a. |
| NCBI ID | WP_076614558.1 | Uniprot ID | A0A1P8Q2J2 |
| Organism | Companilactobacillus allii strain WiKim39 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1139206..1183353 | 1148981..1149448 | within | 0 |
Gene organization within MGE regions
Location: 1139206..1183353
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTM29_RS05455 (BTM29_05455) | - | 1139206..1140321 (-) | 1116 | WP_076614542.1 | tyrosine-type recombinase/integrase | - |
| BTM29_RS05460 (BTM29_05460) | - | 1140483..1141190 (-) | 708 | WP_076614543.1 | hypothetical protein | - |
| BTM29_RS05465 (BTM29_05465) | - | 1141252..1141953 (-) | 702 | WP_076614544.1 | helix-turn-helix domain-containing protein | - |
| BTM29_RS13150 (BTM29_05470) | - | 1142095..1142328 (+) | 234 | WP_076614545.1 | helix-turn-helix transcriptional regulator | - |
| BTM29_RS05475 (BTM29_05475) | - | 1142508..1142906 (+) | 399 | WP_125673057.1 | hypothetical protein | - |
| BTM29_RS05480 (BTM29_05480) | - | 1142893..1143228 (+) | 336 | WP_076614547.1 | DUF771 domain-containing protein | - |
| BTM29_RS05485 (BTM29_05485) | - | 1143230..1143508 (+) | 279 | WP_076614548.1 | hypothetical protein | - |
| BTM29_RS05490 (BTM29_05490) | - | 1143907..1144449 (+) | 543 | WP_076614549.1 | host-nuclease inhibitor Gam family protein | - |
| BTM29_RS05495 (BTM29_05495) | - | 1144452..1145201 (+) | 750 | WP_076614550.1 | ERF family protein | - |
| BTM29_RS05500 (BTM29_05500) | - | 1145231..1146025 (+) | 795 | WP_076614551.1 | DnaD domain-containing protein | - |
| BTM29_RS05505 (BTM29_05505) | - | 1146047..1146805 (+) | 759 | WP_225972245.1 | AAA family ATPase | - |
| BTM29_RS05510 (BTM29_05510) | - | 1146808..1147095 (+) | 288 | WP_076614553.1 | hypothetical protein | - |
| BTM29_RS05515 (BTM29_05515) | - | 1147110..1147391 (+) | 282 | WP_076614554.1 | hypothetical protein | - |
| BTM29_RS05520 (BTM29_05520) | - | 1147392..1147835 (+) | 444 | WP_076614555.1 | RusA family crossover junction endodeoxyribonuclease | - |
| BTM29_RS05525 (BTM29_05525) | - | 1147849..1148043 (+) | 195 | WP_257787700.1 | helix-turn-helix domain-containing protein | - |
| BTM29_RS05530 (BTM29_05530) | - | 1148220..1148984 (+) | 765 | WP_076614557.1 | phage antirepressor KilAC domain-containing protein | - |
| BTM29_RS05535 (BTM29_05535) | ssb | 1148981..1149448 (+) | 468 | WP_076614558.1 | single-stranded DNA-binding protein | Machinery gene |
| BTM29_RS05540 (BTM29_05540) | - | 1149462..1150214 (+) | 753 | WP_076614559.1 | DNA-methyltransferase | - |
| BTM29_RS05545 (BTM29_05545) | - | 1150229..1150438 (+) | 210 | WP_076614560.1 | hypothetical protein | - |
| BTM29_RS05550 (BTM29_05550) | - | 1150454..1150672 (+) | 219 | WP_076614561.1 | hypothetical protein | - |
| BTM29_RS05555 (BTM29_05555) | - | 1150669..1151796 (+) | 1128 | WP_076614562.1 | DNA cytosine methyltransferase | - |
| BTM29_RS05560 (BTM29_05560) | - | 1151810..1152232 (+) | 423 | WP_076614563.1 | hypothetical protein | - |
| BTM29_RS12795 | - | 1152222..1152383 (+) | 162 | WP_157886442.1 | hypothetical protein | - |
| BTM29_RS05565 (BTM29_05565) | - | 1152468..1152875 (+) | 408 | WP_076614564.1 | hypothetical protein | - |
| BTM29_RS05570 (BTM29_05570) | - | 1152999..1153424 (+) | 426 | WP_076614565.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| BTM29_RS05575 (BTM29_05575) | - | 1153929..1154189 (+) | 261 | WP_076614566.1 | Gp49 family protein | - |
| BTM29_RS05580 (BTM29_05580) | - | 1154189..1154392 (+) | 204 | WP_076614567.1 | hypothetical protein | - |
| BTM29_RS05585 (BTM29_05585) | - | 1154432..1154662 (+) | 231 | WP_076614568.1 | hypothetical protein | - |
| BTM29_RS12800 | - | 1154665..1154847 (+) | 183 | WP_125673045.1 | hypothetical protein | - |
| BTM29_RS05590 (BTM29_05590) | - | 1154807..1155121 (+) | 315 | WP_125673046.1 | hypothetical protein | - |
| BTM29_RS05595 (BTM29_05595) | - | 1155121..1155696 (+) | 576 | WP_076614570.1 | ParB N-terminal domain-containing protein | - |
| BTM29_RS05600 (BTM29_05600) | - | 1155693..1156460 (+) | 768 | WP_076614571.1 | hypothetical protein | - |
| BTM29_RS05605 (BTM29_05605) | - | 1156472..1157188 (+) | 717 | WP_076614572.1 | queuosine precursor transporter | - |
| BTM29_RS05610 (BTM29_05610) | queC | 1157201..1157902 (+) | 702 | WP_076614573.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| BTM29_RS05615 (BTM29_05615) | - | 1157942..1158595 (+) | 654 | WP_076614574.1 | helix-turn-helix domain-containing protein | - |
| BTM29_RS05620 (BTM29_05620) | - | 1158579..1159898 (+) | 1320 | WP_076614575.1 | PBSX family phage terminase large subunit | - |
| BTM29_RS05625 (BTM29_05625) | - | 1159917..1161527 (+) | 1611 | WP_076614576.1 | phage portal protein | - |
| BTM29_RS05630 (BTM29_05630) | - | 1161508..1161867 (+) | 360 | WP_076614577.1 | hypothetical protein | - |
| BTM29_RS05635 (BTM29_05635) | - | 1161854..1162843 (+) | 990 | WP_076614578.1 | minor capsid protein | - |
| BTM29_RS05640 (BTM29_05640) | - | 1162838..1163335 (-) | 498 | WP_076614579.1 | hypothetical protein | - |
| BTM29_RS05645 (BTM29_05645) | - | 1163498..1164157 (+) | 660 | WP_076614580.1 | DUF4355 domain-containing protein | - |
| BTM29_RS05650 (BTM29_05650) | - | 1164170..1164496 (+) | 327 | WP_076614581.1 | hypothetical protein | - |
| BTM29_RS05655 (BTM29_05655) | - | 1164500..1165513 (+) | 1014 | WP_076614582.1 | major capsid protein | - |
| BTM29_RS05660 (BTM29_05660) | - | 1165620..1165970 (+) | 351 | WP_076614583.1 | phage head-tail connector protein | - |
| BTM29_RS05665 (BTM29_05665) | - | 1165967..1166290 (+) | 324 | WP_076614584.1 | hypothetical protein | - |
| BTM29_RS05670 (BTM29_05670) | - | 1166287..1166766 (+) | 480 | WP_076614585.1 | hypothetical protein | - |
| BTM29_RS05675 (BTM29_05675) | - | 1166797..1167171 (+) | 375 | WP_076614586.1 | DUF6838 family protein | - |
| BTM29_RS05680 (BTM29_05680) | - | 1167224..1168009 (+) | 786 | WP_076614587.1 | hypothetical protein | - |
| BTM29_RS05685 (BTM29_05685) | - | 1168030..1168308 (+) | 279 | WP_076614588.1 | hypothetical protein | - |
| BTM29_RS05690 (BTM29_05690) | - | 1168377..1168844 (+) | 468 | WP_076614589.1 | hypothetical protein | - |
| BTM29_RS05695 (BTM29_05695) | - | 1168868..1169182 (+) | 315 | WP_076614590.1 | hypothetical protein | - |
| BTM29_RS05700 (BTM29_05700) | - | 1169183..1173682 (+) | 4500 | WP_076614591.1 | tape measure protein | - |
| BTM29_RS05705 (BTM29_05705) | - | 1173684..1174610 (+) | 927 | WP_076614592.1 | phage tail domain-containing protein | - |
| BTM29_RS05710 (BTM29_05710) | - | 1174610..1176415 (+) | 1806 | WP_076614593.1 | phage tail protein | - |
| BTM29_RS05715 (BTM29_05715) | - | 1176387..1176845 (+) | 459 | WP_076614594.1 | phage tail protein | - |
| BTM29_RS05720 (BTM29_05720) | - | 1176848..1177561 (+) | 714 | WP_076614595.1 | hypothetical protein | - |
| BTM29_RS05725 (BTM29_05725) | - | 1177565..1178593 (+) | 1029 | WP_076614596.1 | BppU family phage baseplate upper protein | - |
| BTM29_RS05730 (BTM29_05730) | - | 1178593..1178868 (+) | 276 | WP_076614597.1 | hypothetical protein | - |
| BTM29_RS05735 (BTM29_05735) | - | 1178871..1180760 (+) | 1890 | WP_076614598.1 | hypothetical protein | - |
| BTM29_RS05740 (BTM29_05740) | - | 1180760..1181200 (+) | 441 | WP_076614599.1 | hypothetical protein | - |
| BTM29_RS05745 (BTM29_05745) | - | 1181213..1181344 (+) | 132 | WP_083685936.1 | XkdX family protein | - |
| BTM29_RS05755 (BTM29_05755) | - | 1181762..1182076 (+) | 315 | WP_076614601.1 | hypothetical protein | - |
| BTM29_RS05760 (BTM29_05760) | - | 1182076..1182366 (+) | 291 | WP_076614602.1 | hypothetical protein | - |
| BTM29_RS05765 (BTM29_05765) | - | 1182367..1183353 (+) | 987 | WP_076614603.1 | SLAP domain-containing protein | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 17204.99 Da Isoelectric Point: 6.3802
>NTDB_id=214873 BTM29_RS05535 WP_076614558.1 1148981..1149448(+) (ssb) [Companilactobacillus allii strain WiKim39]
MINTVALTGRLTRDPELRYTSSNKPVASFKLAVNRQYTNSNGEREADFIDCVIWRGAEALVNNTSKGSLIGVEGRLQTRS
YENQQGSRVFVTEVVCSSFSFLESKSEKQQKNNTDTNGYSNKLAEKTNKPAANKNADPFADNSKPIDISDDDLPF
MINTVALTGRLTRDPELRYTSSNKPVASFKLAVNRQYTNSNGEREADFIDCVIWRGAEALVNNTSKGSLIGVEGRLQTRS
YENQQGSRVFVTEVVCSSFSFLESKSEKQQKNNTDTNGYSNKLAEKTNKPAANKNADPFADNSKPIDISDDDLPF
Nucleotide
Download Length: 468 bp
>NTDB_id=214873 BTM29_RS05535 WP_076614558.1 1148981..1149448(+) (ssb) [Companilactobacillus allii strain WiKim39]
ATGATTAACACCGTAGCGTTAACAGGACGCCTGACACGTGATCCAGAACTTAGATACACGTCAAGCAATAAACCGGTAGC
AAGCTTCAAGCTGGCAGTTAACAGGCAATACACCAACTCAAATGGTGAACGAGAAGCAGACTTTATTGATTGTGTTATCT
GGCGTGGCGCTGAGGCATTAGTCAACAACACGAGTAAAGGTTCACTTATTGGTGTTGAGGGACGTTTACAAACACGTTCT
TATGAGAATCAGCAAGGCTCACGTGTATTTGTGACTGAGGTTGTATGCAGCAGTTTCTCATTTTTGGAGTCTAAGTCAGA
GAAACAGCAGAAAAATAATACTGATACCAATGGTTACAGCAATAAACTAGCAGAAAAGACAAATAAACCTGCAGCAAATA
AGAATGCCGATCCATTTGCAGATAACAGCAAACCGATAGATATATCGGATGACGATTTGCCATTCTAA
ATGATTAACACCGTAGCGTTAACAGGACGCCTGACACGTGATCCAGAACTTAGATACACGTCAAGCAATAAACCGGTAGC
AAGCTTCAAGCTGGCAGTTAACAGGCAATACACCAACTCAAATGGTGAACGAGAAGCAGACTTTATTGATTGTGTTATCT
GGCGTGGCGCTGAGGCATTAGTCAACAACACGAGTAAAGGTTCACTTATTGGTGTTGAGGGACGTTTACAAACACGTTCT
TATGAGAATCAGCAAGGCTCACGTGTATTTGTGACTGAGGTTGTATGCAGCAGTTTCTCATTTTTGGAGTCTAAGTCAGA
GAAACAGCAGAAAAATAATACTGATACCAATGGTTACAGCAATAAACTAGCAGAAAAGACAAATAAACCTGCAGCAAATA
AGAATGCCGATCCATTTGCAGATAACAGCAAACCGATAGATATATCGGATGACGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.725 |
100 |
0.626 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.488 |
100 |
0.594 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.511 |
84.516 |
0.368 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
50.909 |
70.968 |
0.361 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.748 |
84.516 |
0.361 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.748 |
84.516 |
0.361 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.748 |
84.516 |
0.361 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.748 |
84.516 |
0.361 |