Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   BWQ98_RS11765 Genome accession   NZ_CP019299
Coordinates   450820..450984 (-) Length   54 a.a.
NCBI ID   WP_306420852.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HKU1-14     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 445820..455984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWQ98_RS02405 (BWQ98_02410) - 446153..446482 (-) 330 WP_000132572.1 hypothetical protein -
  BWQ98_RS02410 (BWQ98_02415) - 446758..447096 (+) 339 WP_050115203.1 LytTR family DNA-binding domain-containing protein -
  BWQ98_RS02415 (BWQ98_02420) comE/blpR 447101..447838 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  BWQ98_RS02420 (BWQ98_02425) - 447852..449192 (+) 1341 WP_127244994.1 sensor histidine kinase -
  BWQ98_RS02425 (BWQ98_02430) blpC 449236..449391 (-) 156 WP_061450964.1 quorum-sensing system pheromone BlpC -
  BWQ98_RS02430 (BWQ98_02435) - 449448..450809 (-) 1362 WP_050211505.1 bacteriocin secretion accessory protein -
  BWQ98_RS11765 comA/nlmT 450820..450984 (-) 165 WP_306420852.1 hypothetical protein Regulator
  BWQ98_RS11770 (BWQ98_02440) blpA 451194..452495 (-) 1302 Protein_455 peptide cleavage/export ABC transporter BlpA -
  BWQ98_RS11775 (BWQ98_02445) comA/nlmT 452389..452976 (-) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  BWQ98_RS02445 (BWQ98_02450) blpI 453258..453455 (+) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  BWQ98_RS02455 (BWQ98_02460) blpJ 453922..454191 (+) 270 WP_001093248.1 bacteriocin-like peptide BlpJ -
  BWQ98_RS02460 (BWQ98_02465) blpU 454260..454490 (+) 231 WP_050243503.1 bacteriocin-like peptide BlpU -
  BWQ98_RS02465 (BWQ98_02470) - 454493..454612 (+) 120 WP_050233614.1 PncF family bacteriocin immunity protein -
  BWQ98_RS02470 (BWQ98_02475) - 454909..455073 (+) 165 WP_000727118.1 hypothetical protein -
  BWQ98_RS02475 (BWQ98_02480) - 455070..455473 (+) 404 Protein_462 immunity protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6235.24 Da        Isoelectric Point: 8.7682

>NTDB_id=214741 BWQ98_RS11765 WP_306420852.1 450820..450984(-) (comA/nlmT) [Streptococcus pneumoniae strain HKU1-14]
MSLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide


Download         Length: 165 bp        

>NTDB_id=214741 BWQ98_RS11765 WP_306420852.1 450820..450984(-) (comA/nlmT) [Streptococcus pneumoniae strain HKU1-14]
ATGTCCCTAACTGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGAACTAACCGTGTCATTGTTCT
TGACCAGGGGAAAATCATTGAAGTTGGTAGTCACCAAGAGTTAATGCAAGCGCAAGGATTCTACCATCATCTATTCAATA
AATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

64.151

98.148

0.63
  comA Streptococcus gordonii str. Challis substr. CH1

67.347

90.741

0.611
  comA Streptococcus mitis NCTC 12261

63.265

90.741

0.574
  comA Streptococcus pneumoniae TIGR4

63.265

90.741

0.574
  comA Streptococcus pneumoniae Rx1

63.265

90.741

0.574
  comA Streptococcus pneumoniae D39

63.265

90.741

0.574
  comA Streptococcus pneumoniae R6

63.265

90.741

0.574
  comA Streptococcus mitis SK321

61.224

90.741

0.556
  rcrQ Streptococcus mutans UA159

43.75

88.889

0.389

Multiple sequence alignment