Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM333_RS20945 Genome accession   NZ_CP024851
Coordinates   4029637..4030113 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4024637..4035113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM333_RS20910 (AM333_20925) - 4024801..4025706 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  AM333_RS20915 (AM333_20930) - 4025703..4026773 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  AM333_RS20920 (AM333_20935) - 4026909..4027592 (+) 684 WP_000775500.1 hypothetical protein -
  AM333_RS20925 (AM333_20940) - 4027608..4028018 (+) 411 WP_000846713.1 hypothetical protein -
  AM333_RS20935 (AM333_20950) - 4028239..4029060 (+) 822 WP_021523139.1 DUF932 domain-containing protein -
  AM333_RS20940 (AM333_20955) - 4029142..4029621 (+) 480 WP_001703514.1 antirestriction protein -
  AM333_RS20945 (AM333_20960) radC 4029637..4030113 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  AM333_RS20950 (AM333_20965) yeeT 4030176..4030397 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  AM333_RS20955 (AM333_20970) cbeA 4030471..4030839 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  AM333_RS20960 (AM333_20975) cbtA 4030928..4031301 (+) 374 Protein_3816 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AM333_RS20965 (AM333_20980) yeeW 4031298..4031492 (+) 195 WP_000988600.1 DUF5983 family protein -
  AM333_RS28165 - 4031538..4031618 (+) 81 Protein_3818 hypothetical protein -
  AM333_RS28985 (AM333_20990) - 4032107..4032289 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM333_RS20980 (AM333_20995) tmaR 4032390..4032719 (-) 330 WP_000450409.1 DUF496 family protein -
  AM333_RS20985 (AM333_21000) yeeA 4032891..4033949 (-) 1059 WP_001200890.1 FUSC family protein -
  AM333_RS20990 (AM333_21005) sbmC 4034147..4034620 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=214737 AM333_RS20945 WP_001186773.1 4029637..4030113(+) (radC) [Escherichia coli strain AR_0006]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214737 AM333_RS20945 WP_001186773.1 4029637..4030113(+) (radC) [Escherichia coli strain AR_0006]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment