Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   KSH_RS02725 Genome accession   NZ_CP024180
Coordinates   601247..603577 (+) Length   776 a.a.
NCBI ID   WP_099807699.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 596247..608577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS02705 (KSH_02700) pilM 598222..599274 (+) 1053 WP_099807698.1 pilus assembly protein PilM Machinery gene
  KSH_RS02710 (KSH_02705) pilN 599274..599945 (+) 672 WP_076774548.1 PilN domain-containing protein Machinery gene
  KSH_RS02715 (KSH_02710) comO/pilO 599948..600706 (+) 759 WP_198510985.1 type 4a pilus biogenesis protein PilO Machinery gene
  KSH_RS02720 (KSH_02715) comL/pilP 600696..601229 (+) 534 WP_065253722.1 pilus assembly protein PilP Machinery gene
  KSH_RS02725 (KSH_02720) comQ/pilQ 601247..603577 (+) 2331 WP_099807699.1 type IV pilus secretin family protein Machinery gene
  KSH_RS02730 (KSH_02725) - 603685..604221 (+) 537 WP_007116385.1 shikimate kinase -
  KSH_RS02735 (KSH_02730) aroB 604290..605387 (+) 1098 WP_099807700.1 3-dehydroquinate synthase -
  KSH_RS02740 (KSH_02735) - 605457..606440 (+) 984 WP_099807701.1 hypothetical protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 82993.43 Da        Isoelectric Point: 7.0478

>NTDB_id=211422 KSH_RS02725 WP_099807699.1 601247..603577(+) (comQ/pilQ) [Moraxella osloensis strain KSH]
MNFNAYPFRTSTSKLAVAMSAMLVSSSVFAADTIRNISVTTPSAVLTELNIDFANSAVTPTAYELASPTRLVLDFPNVNN
QIASRMQTYNQGYVKNITTLTNDSMTRMIIELSNQATFSTRVINNRLVVSMQPKTTAATNPAIVKPVVTTAAVVSQPAVV
TPAAVVTEAAPVIATPPPVVVQTPPPVAVVTQTPKVAPPANTMVVKVNPLLNPAAAVVQQYNYDGLAAINFNGTSNGGGN
VSINLVNDSIPVDVQRMGDELVIRLTGATIPSRLQKQMTVGNGLVRDVIATNQGRNGVIRITMTGDYDYRAFQTGNQLNI
NIDPPKRLREPTLEERTYSGAPLSLEFQDVSVRTILEVLAQHTNTNIVASDSVSGNITLRLINVPWDQALDIILKSKNLD
KRVNGNVIWVAPAAELAKQEADELKAQQEKKVLDPLRTEYIRLNYAKAENVRTLIEAGRATSDRSSSNTSLLTDRGTVTI
DARTNTLIVKDTAETISNIRDLISKIDIAVKQVMIEARIVSATDTFSKELGVKWGILSQGAASNRNLLVGGNLSTIDSLK
TYTTATNSDGTTYPVYSGITAANNLSVNLGATNAAGSIAFGLLSISDLLLDLELSAMQADNKGEVISSPKVLTADKQTAR
IMSGTQIPYQEASASGATSTSFVEAALSLEVTPNITPEGRIGMDLSIENGSPTIVNGATAVSKDSIKTNVVVDDGQTVVL
GGVFKNTLGNDVTKIPFLGDLPYVDRFFKRTSKTNNKQELLIFVTPKLVNDTGRIN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=211422 KSH_RS02725 WP_099807699.1 601247..603577(+) (comQ/pilQ) [Moraxella osloensis strain KSH]
ATGAATTTTAATGCCTATCCATTTCGAACTTCAACGTCTAAGCTTGCGGTAGCGATGAGTGCGATGTTAGTATCTAGCAG
TGTGTTTGCAGCTGATACCATTAGAAATATCTCGGTTACCACGCCGAGCGCTGTGCTAACAGAACTCAATATCGACTTCG
CTAACAGTGCTGTGACGCCGACGGCTTATGAACTTGCCTCACCCACACGATTGGTGTTGGATTTCCCCAATGTGAATAAT
CAAATTGCATCACGGATGCAAACTTATAACCAAGGCTATGTCAAAAATATCACCACGCTGACCAATGACAGTATGACACG
TATGATTATTGAGTTGTCAAATCAAGCGACCTTTAGTACACGTGTGATTAATAATCGCCTGGTAGTATCAATGCAGCCGA
AAACCACAGCAGCTACCAATCCAGCTATCGTTAAACCTGTGGTGACTACAGCGGCCGTTGTGAGTCAGCCCGCGGTGGTA
ACGCCTGCTGCCGTAGTGACTGAAGCTGCGCCTGTGATTGCTACACCGCCACCTGTGGTCGTGCAAACGCCGCCACCTGT
TGCCGTCGTGACCCAAACACCAAAAGTCGCCCCACCCGCCAATACCATGGTAGTCAAAGTCAATCCTTTATTAAATCCTG
CTGCCGCCGTTGTTCAACAATACAACTATGATGGCCTAGCGGCGATTAATTTTAATGGCACCTCGAACGGCGGCGGTAAT
GTTAGCATTAATTTGGTGAATGACAGCATCCCTGTGGATGTACAGCGCATGGGTGATGAGTTAGTCATTCGTCTGACAGG
CGCTACCATTCCCAGTCGCCTGCAAAAACAAATGACCGTAGGTAACGGCTTGGTGCGTGATGTTATCGCAACCAACCAAG
GACGCAATGGCGTGATTCGTATTACCATGACAGGCGATTATGACTATAGAGCCTTTCAAACAGGTAATCAGCTAAATATC
AATATCGATCCCCCCAAACGTCTGCGCGAGCCGACCCTTGAGGAGCGTACCTATAGCGGGGCGCCTTTATCACTAGAGTT
TCAAGATGTCAGCGTGCGTACGATTTTAGAAGTGTTGGCACAACATACCAATACCAATATTGTTGCCAGTGACAGCGTCA
GTGGTAATATTACCTTGCGTCTGATTAACGTGCCTTGGGATCAAGCCCTAGATATTATCCTAAAAAGTAAAAATTTGGAT
AAACGGGTTAATGGTAATGTAATTTGGGTGGCACCCGCGGCAGAACTTGCCAAACAAGAAGCCGATGAGTTAAAAGCGCA
ACAAGAGAAAAAAGTATTAGACCCACTGCGTACCGAATATATCCGACTTAACTACGCGAAAGCAGAAAATGTACGAACAT
TGATTGAAGCAGGCAGAGCAACATCCGATCGTTCGAGCAGCAATACCTCACTGTTAACAGACAGAGGTACAGTTACAATC
GATGCCAGAACCAATACCTTGATTGTTAAAGATACCGCTGAAACCATCAGCAACATCCGTGATTTGATTAGTAAAATCGA
TATCGCTGTCAAACAAGTGATGATTGAAGCCCGTATTGTGAGTGCGACAGACACCTTTAGTAAAGAACTTGGGGTAAAAT
GGGGCATTTTATCACAAGGCGCGGCAAGTAATCGTAACCTGCTGGTGGGCGGTAATTTAAGTACCATTGATAGCCTTAAG
ACTTATACCACAGCTACAAATTCCGATGGTACCACTTATCCAGTCTATAGCGGTATCACTGCCGCTAATAACCTCAGTGT
CAATTTGGGGGCAACCAACGCCGCAGGCTCGATTGCTTTTGGCTTGTTGAGCATTTCAGATTTACTATTAGATTTAGAGT
TGTCAGCCATGCAAGCGGATAACAAAGGTGAAGTCATCTCCAGTCCAAAAGTGCTAACCGCCGACAAACAAACCGCCAGA
ATCATGTCAGGCACGCAAATCCCTTATCAAGAAGCCTCTGCCAGTGGGGCGACCTCAACGAGCTTTGTCGAAGCGGCATT
GAGTCTTGAAGTAACCCCTAATATCACCCCTGAAGGTCGTATTGGCATGGATTTGAGTATTGAAAATGGTTCACCAACTA
TCGTCAATGGTGCGACAGCGGTTTCTAAAGATTCGATTAAAACCAATGTGGTCGTCGATGATGGTCAAACGGTTGTGCTC
GGTGGCGTGTTTAAAAATACCTTAGGTAACGATGTGACTAAAATCCCTTTCTTAGGCGATTTACCTTATGTTGATCGCTT
CTTTAAACGCACCTCAAAAACCAACAACAAGCAAGAATTATTGATTTTTGTGACCCCAAAATTGGTGAATGACACGGGTC
GTATCAATTAA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(439-512)

AMIN domain (AMIN)

(48-130)

AMIN domain (AMIN)

(240-321)

Secretin and TonB N terminus short domain (STN)

(366-412)

Bacterial type II and III secretion system protein (Secretin)

(616-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

50.831

77.577

0.394
  pilQ Acinetobacter baumannii D1279779

49.18

78.608

0.387
  pilQ Acinetobacter baumannii strain A118

49.18

78.608

0.387
  pilQ Pseudomonas aeruginosa PAK

36.528

99.485

0.363