Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO/pilO   Type   Machinery gene
Locus tag   KSH_RS02715 Genome accession   NZ_CP024180
Coordinates   599948..600706 (+) Length   252 a.a.
NCBI ID   WP_198510985.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594948..605706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS02700 (KSH_02695) - 595291..598020 (-) 2730 WP_099807697.1 penicillin-binding protein 1A -
  KSH_RS02705 (KSH_02700) pilM 598222..599274 (+) 1053 WP_099807698.1 pilus assembly protein PilM Machinery gene
  KSH_RS02710 (KSH_02705) pilN 599274..599945 (+) 672 WP_076774548.1 PilN domain-containing protein Machinery gene
  KSH_RS02715 (KSH_02710) comO/pilO 599948..600706 (+) 759 WP_198510985.1 type 4a pilus biogenesis protein PilO Machinery gene
  KSH_RS02720 (KSH_02715) comL/pilP 600696..601229 (+) 534 WP_065253722.1 pilus assembly protein PilP Machinery gene
  KSH_RS02725 (KSH_02720) comQ/pilQ 601247..603577 (+) 2331 WP_099807699.1 type IV pilus secretin family protein Machinery gene
  KSH_RS02730 (KSH_02725) - 603685..604221 (+) 537 WP_007116385.1 shikimate kinase -
  KSH_RS02735 (KSH_02730) aroB 604290..605387 (+) 1098 WP_099807700.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28616.81 Da        Isoelectric Point: 9.4260

>NTDB_id=211420 KSH_RS02715 WP_198510985.1 599948..600706(+) (comO/pilO) [Moraxella osloensis strain KSH]
MKLTNPLKRPKLVKKPVHITAKKSFDVKAFTESFKSLDQNNYGSWPVPVKVTVLLFMVAVIAFLTWFLPISTKRDEIAAA
EAEQQTLLDEYRQKESKARHLKEYQAQVSKMQSDFKELLNQLPKDTRISDLVDGINMVGVGSNIKFQDIKVEPEVSQEFF
IEQPIRIAALGDYHQFGSFISGLAKLPRIITLHDFEVTNPSPSLDKLPETNLVLNVKTYRSKELNEEELKKAQKDNQKNP
AGSDNKEANNGN

Nucleotide


Download         Length: 759 bp        

>NTDB_id=211420 KSH_RS02715 WP_198510985.1 599948..600706(+) (comO/pilO) [Moraxella osloensis strain KSH]
GTGAAATTAACCAATCCGCTAAAAAGACCGAAACTCGTCAAAAAACCCGTTCACATTACCGCAAAAAAATCGTTTGATGT
TAAAGCCTTTACCGAAAGCTTTAAATCCCTAGACCAAAATAATTATGGTAGCTGGCCTGTGCCTGTTAAGGTTACCGTAT
TGCTATTTATGGTTGCTGTTATCGCCTTTTTAACTTGGTTTCTACCTATTAGTACCAAACGTGATGAGATTGCCGCTGCC
GAAGCCGAGCAGCAAACCTTGTTAGATGAATATCGCCAAAAAGAATCCAAAGCACGTCATCTAAAAGAATATCAAGCGCA
AGTATCAAAAATGCAGTCTGATTTTAAAGAACTGCTCAATCAATTACCCAAAGACACCCGTATTTCTGACTTGGTGGATG
GCATTAATATGGTTGGTGTGGGCAGTAACATTAAATTTCAGGATATCAAAGTTGAACCTGAAGTGTCCCAAGAGTTCTTT
ATTGAGCAGCCAATTCGTATTGCCGCTTTAGGAGATTATCACCAATTTGGCTCATTCATTAGTGGTCTAGCTAAACTACC
TCGGATTATTACCCTGCATGACTTTGAGGTCACCAACCCTAGTCCTAGCCTAGACAAGCTACCAGAAACCAATCTTGTTT
TGAACGTTAAAACTTATCGTTCAAAAGAGCTAAATGAAGAAGAATTAAAGAAGGCACAAAAAGATAATCAAAAAAATCCA
GCTGGGTCTGACAATAAGGAAGCGAATAATGGCAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(78-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO/pilO Acinetobacter baylyi ADP1

45.175

90.476

0.409
  pilO Acinetobacter baumannii D1279779

48.02

80.159

0.385

Multiple sequence alignment