Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KSH_RS02710 Genome accession   NZ_CP024180
Coordinates   599274..599945 (+) Length   223 a.a.
NCBI ID   WP_076774548.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594274..604945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS02695 (KSH_02690) - 594697..595215 (+) 519 WP_099807696.1 DUF6586 family protein -
  KSH_RS02700 (KSH_02695) - 595291..598020 (-) 2730 WP_099807697.1 penicillin-binding protein 1A -
  KSH_RS02705 (KSH_02700) pilM 598222..599274 (+) 1053 WP_099807698.1 pilus assembly protein PilM Machinery gene
  KSH_RS02710 (KSH_02705) pilN 599274..599945 (+) 672 WP_076774548.1 PilN domain-containing protein Machinery gene
  KSH_RS02715 (KSH_02710) comO/pilO 599948..600706 (+) 759 WP_198510985.1 type 4a pilus biogenesis protein PilO Machinery gene
  KSH_RS02720 (KSH_02715) comL/pilP 600696..601229 (+) 534 WP_065253722.1 pilus assembly protein PilP Machinery gene
  KSH_RS02725 (KSH_02720) comQ/pilQ 601247..603577 (+) 2331 WP_099807699.1 type IV pilus secretin family protein Machinery gene
  KSH_RS02730 (KSH_02725) - 603685..604221 (+) 537 WP_007116385.1 shikimate kinase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24739.32 Da        Isoelectric Point: 9.6374

>NTDB_id=211419 KSH_RS02710 WP_076774548.1 599274..599945(+) (pilN) [Moraxella osloensis strain KSH]
MAKINLLPWRQELREQRNREFMTLVVAVLLLSLLGAFAAWSYYKNTLENQQLANERIKQENANLDKALKEIQTLEQQRDD
IIARMKVIQDLQGRRPVPVRIWEDIARIIPAQMYLTSMKREADTITFTGQADNPNVISTFMRSLDGTQWLEKSAVVSIQQ
PNAVAYQAPTPAPAAGNISASSTSATLPEANYVTFVVTTMVKQTQVASATAASGVAASASKEK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=211419 KSH_RS02710 WP_076774548.1 599274..599945(+) (pilN) [Moraxella osloensis strain KSH]
ATGGCAAAGATTAACTTACTTCCTTGGCGTCAAGAACTTCGTGAACAAAGAAACCGTGAGTTTATGACTTTAGTGGTTGC
GGTATTATTATTATCACTACTTGGTGCCTTTGCGGCATGGAGTTACTATAAAAACACCCTAGAAAACCAGCAGCTTGCTA
ATGAGCGCATCAAACAAGAAAACGCTAATTTAGACAAGGCGTTAAAAGAAATCCAAACCCTCGAGCAGCAGCGTGATGAT
ATCATCGCGCGTATGAAAGTGATTCAAGACTTGCAAGGCCGTCGCCCTGTCCCTGTCCGTATTTGGGAAGATATTGCCAG
AATTATCCCCGCACAAATGTATTTAACCAGTATGAAGCGTGAAGCTGATACCATCACCTTTACCGGTCAAGCCGACAACC
CGAATGTGATTTCAACATTTATGCGCAGTCTTGATGGGACGCAGTGGTTAGAAAAATCGGCTGTGGTCAGTATACAGCAG
CCCAATGCGGTGGCTTATCAAGCACCCACACCCGCACCTGCTGCTGGTAACATCAGTGCTAGCAGTACCAGCGCAACATT
ACCAGAAGCCAATTACGTGACTTTTGTGGTAACAACCATGGTTAAGCAAACCCAAGTCGCCAGTGCCACCGCTGCAAGTG
GCGTTGCGGCAAGTGCGAGTAAGGAGAAATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(101-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

37.885

100

0.386