Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   KSH_RS02705 Genome accession   NZ_CP024180
Coordinates   598222..599274 (+) Length   350 a.a.
NCBI ID   WP_099807698.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593222..604274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS02695 (KSH_02690) - 594697..595215 (+) 519 WP_099807696.1 DUF6586 family protein -
  KSH_RS02700 (KSH_02695) - 595291..598020 (-) 2730 WP_099807697.1 penicillin-binding protein 1A -
  KSH_RS02705 (KSH_02700) pilM 598222..599274 (+) 1053 WP_099807698.1 pilus assembly protein PilM Machinery gene
  KSH_RS02710 (KSH_02705) pilN 599274..599945 (+) 672 WP_076774548.1 PilN domain-containing protein Machinery gene
  KSH_RS02715 (KSH_02710) comO/pilO 599948..600706 (+) 759 WP_198510985.1 type 4a pilus biogenesis protein PilO Machinery gene
  KSH_RS02720 (KSH_02715) comL/pilP 600696..601229 (+) 534 WP_065253722.1 pilus assembly protein PilP Machinery gene
  KSH_RS02725 (KSH_02720) comQ/pilQ 601247..603577 (+) 2331 WP_099807699.1 type IV pilus secretin family protein Machinery gene
  KSH_RS02730 (KSH_02725) - 603685..604221 (+) 537 WP_007116385.1 shikimate kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38377.76 Da        Isoelectric Point: 4.5213

>NTDB_id=211418 KSH_RS02705 WP_099807698.1 598222..599274(+) (pilM) [Moraxella osloensis strain KSH]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIEAVSDALARLSRSRGFSSKNIATA
VAGSSVISKIIEMEADLTELERESLIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVESYAVERAFQLMVDSLPGQPQHIALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQNRYGLTFEEAM
INKRTLSLPDDYYTDVLLPFLDAIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLANMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLIAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=211418 KSH_RS02705 WP_099807698.1 598222..599274(+) (pilM) [Moraxella osloensis strain KSH]
GTGAGGTTATTTACAAAAAACAACAAGCTAGTCGTTGGGGTAGATATCACCACCACTGCGATCAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTACGGCATTGAACCGTTACCTCGCGGTGCTGTTGTTGATAAAAATATTG
TAGATATTGAAGCGGTCAGTGACGCCCTCGCAAGATTATCTCGTAGCAGAGGTTTTTCCAGCAAAAATATTGCGACAGCC
GTAGCAGGCTCTTCGGTTATTAGCAAAATCATTGAGATGGAAGCGGATCTCACAGAGCTTGAACGAGAATCTCTTATACG
TCTAGATGCTGATCAATATATTCCCTATCCTTTATCAGAAGTTAATTTAGATTTTGAAGTGATTGGCCCTTCAGCTACGC
CTGATATGTGTAAGGTATTATTAGTTGCCTCTCGCACTGAAAACGTTGACCAACGTGTCGACGCGGGTGCTTTGGCGGGG
CTGGATACTAAAATTGTGGATGTGGAGTCTTACGCAGTTGAACGCGCCTTTCAATTGATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATATAGCCCTTATTGATATCGGGCACAGCCAAACCACGCTTTATATTGCAAAGGACGGGGAGTTTGTATACA
GCCGTGAACAGCTTTTTGGCGGTGCCCAGTTAACTGAAAGTATTCAAAATCGTTATGGTTTGACGTTCGAGGAGGCTATG
ATTAATAAGCGCACCCTGTCATTGCCAGATGATTACTATACGGATGTGTTACTGCCATTTTTAGATGCCATTGTGCAGCA
AATTACCCGCTCGCTGCAGTTTTATTTTTCATCCAGCCAAAATAGCCAAGTAGACTATATTTTGTTGGGTGGTGGTAGTG
CCAGCATTGCGGGTCTAGCGAACATGGTTGAACAAAAACTTGGTACCCGCACAGGTATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCTTAATAGCAGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.137

100

0.523
  comM Acinetobacter nosocomialis M2

51.852

100

0.52
  comM/pilM Acinetobacter baylyi ADP1

49.003

100

0.491
  pilM Legionella pneumophila strain ERS1305867

43.059

100

0.434