Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   YHS_RS02885 Genome accession   NZ_CP024176
Coordinates   648491..650839 (+) Length   782 a.a.
NCBI ID   WP_099833608.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643491..655839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS02865 (YHS_02870) pilM 645466..646518 (+) 1053 WP_099833605.1 pilus assembly protein PilM Machinery gene
  YHS_RS02870 (YHS_02875) pilN 646518..647189 (+) 672 WP_099833606.1 PilN domain-containing protein Machinery gene
  YHS_RS02875 (YHS_02880) comO/pilO 647192..647950 (+) 759 WP_198510467.1 type 4a pilus biogenesis protein PilO Machinery gene
  YHS_RS02880 (YHS_02885) comL/pilP 647940..648473 (+) 534 WP_099833607.1 pilus assembly protein PilP Machinery gene
  YHS_RS02885 (YHS_02890) comQ/pilQ 648491..650839 (+) 2349 WP_099833608.1 type IV pilus secretin family protein Machinery gene
  YHS_RS02890 (YHS_02895) - 650947..651483 (+) 537 WP_062334134.1 shikimate kinase -
  YHS_RS02895 (YHS_02900) aroB 651552..652649 (+) 1098 WP_099833609.1 3-dehydroquinate synthase -
  YHS_RS02900 (YHS_02905) - 652719..653702 (+) 984 WP_198510468.1 hypothetical protein -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 83570.13 Da        Isoelectric Point: 7.0472

>NTDB_id=211371 YHS_RS02885 WP_099833608.1 648491..650839(+) (comQ/pilQ) [Moraxella osloensis strain YHS]
MNFNAYPFRTSTSKLAVAMSAMLVSSSVFAADTIRNISVTTPSAMLTELNIDFANSAVTPTAYELASPTRLVLDFPNVNN
QIASRMQTYNKGYVNNVTTLTNDSMTRMIIELSNQATFSTRVVNNRLVVSIQPKGSTPAVTTVATNPAIVTPVVTSPVVS
QPAVVAPAVVVTEPAPAPVIVTPPVVVQTPPPVAVVTQTPKVAPPTNTMVVKVNPLLNPAAAVVQQYNYDGLAAINFNGT
SNGGGNISINLVNDSIPVDVQRMGDELVIRLTGATIPSRLQKQMTVGNGLVRDVIATNQGRNGVIRITMTGDYDYRAFQT
GNQLNININPPKRLREPTLEERTYSGAPLSLEFQDVSVRTILEVLAQHTNTNIVASDSVSGNITLRLINVPWDQALDIIL
KSKNLDKRVNGNVIWVAPAAELAKQEADELKAQQEKKVLDPLRTEYIRLNYAKAENVRTLIEAGRATSDRSSSNTSLLTD
RGTVTIDARTNTLIVKDTAETISNIRDLISKIDIAVKQVMIEARIVSATDTFSKELGVKWGILSQGAASNRNLLVGGNLS
TIDSLKTYTTATNADGTTYPVYSGITAANNLSVNLGATNAAGSIAFGLLSISDLLLDLELSAMQADNKGEVISSPKVLTA
DKQTARIMSGTQIPYQEASASGATSTSFVEAALSLEVTPNITPEGRIGMDLSIENGSPTIVNGATAVSKDSIKTNVVVDD
GQTVVLGGVFKNTLGNDVTKIPFLGDLPYVDRFFKRTSKTNNKQELLIFVTPKLVNDTGRIN

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=211371 YHS_RS02885 WP_099833608.1 648491..650839(+) (comQ/pilQ) [Moraxella osloensis strain YHS]
ATGAATTTTAATGCCTATCCATTTCGAACTTCAACGTCTAAGCTAGCGGTAGCGATGAGTGCGATGTTAGTATCTAGCAG
TGTGTTTGCAGCTGATACCATTAGAAATATCTCGGTTACCACGCCGAGCGCTATGTTAACAGAACTCAATATCGACTTCG
CTAACAGTGCTGTGACGCCGACGGCTTATGAACTTGCCTCACCCACACGACTGGTGTTGGATTTCCCCAATGTGAATAAT
CAAATTGCATCACGGATGCAAACTTATAACAAAGGCTATGTCAACAATGTCACCACGCTGACCAACGACAGTATGACACG
TATGATTATTGAACTGTCAAATCAAGCGACCTTTAGTACGCGTGTGGTCAATAATCGCCTCGTTGTCTCCATACAGCCGA
AGGGAAGCACCCCTGCAGTAACCACCGTCGCTACCAATCCAGCAATCGTTACACCTGTGGTGACTAGCCCTGTCGTGAGT
CAGCCCGCGGTGGTAGCGCCTGCTGTCGTCGTAACTGAACCTGCGCCTGCCCCTGTGATTGTCACGCCGCCTGTGGTCGT
GCAAACGCCGCCACCTGTTGCCGTCGTGACCCAAACACCAAAAGTCGCCCCACCCACCAATACCATGGTAGTCAAAGTCA
ATCCTTTATTAAATCCTGCTGCCGCCGTTGTTCAACAATATAACTATGATGGTCTAGCGGCAATTAATTTTAATGGTACC
TCGAACGGCGGCGGTAATATTAGCATTAATTTGGTAAATGACAGCATCCCTGTGGATGTGCAGCGCATGGGTGATGAGTT
AGTCATTCGTCTGACAGGTGCTACCATTCCCAGTCGCCTGCAAAAACAAATGACCGTAGGTAACGGCTTGGTGCGTGATG
TTATCGCAACCAACCAAGGACGCAATGGCGTGATTCGTATTACCATGACAGGCGATTATGACTATAGAGCCTTTCAAACA
GGTAATCAGCTAAATATCAATATCAATCCCCCCAAACGTCTGCGCGAGCCGACCCTTGAGGAGCGTACCTATAGCGGGGC
GCCTTTATCACTAGAGTTTCAAGATGTCAGCGTGCGGACGATTTTAGAAGTGTTGGCACAACATACCAATACCAATATTG
TTGCCAGTGACAGCGTCAGTGGTAATATTACCTTGCGTCTGATTAACGTGCCTTGGGATCAAGCCCTAGATATTATCCTA
AAAAGTAAAAATTTGGATAAACGGGTTAATGGTAATGTAATTTGGGTGGCACCCGCGGCAGAACTTGCCAAACAAGAAGC
CGATGAGTTAAAAGCGCAACAAGAGAAAAAAGTATTAGACCCACTGCGTACCGAATATATCCGACTCAACTACGCGAAAG
CAGAAAATGTACGAACATTAATTGAAGCAGGCAGAGCAACATCCGATCGTTCGAGCAGCAATACCTCACTGTTAACAGAC
AGAGGTACAGTTACAATCGATGCCAGAACCAATACCTTGATTGTTAAAGATACCGCTGAAACCATCAGCAACATCCGTGA
TTTGATTAGTAAAATCGATATCGCTGTCAAACAAGTGATGATTGAAGCCCGTATTGTGAGTGCGACAGACACCTTTAGTA
AAGAACTTGGGGTAAAATGGGGCATTTTATCACAAGGCGCGGCAAGTAATCGTAACCTGCTGGTGGGCGGTAATTTAAGT
ACCATTGATAGCCTTAAGACTTATACCACGGCTACAAATGCCGATGGTACTACCTATCCAGTTTATAGCGGTATCACTGC
CGCTAATAACCTCAGTGTCAATTTGGGGGCAACTAACGCCGCAGGCTCGATTGCTTTTGGCTTGTTGAGCATTTCAGATT
TACTATTAGATTTAGAATTGTCAGCCATGCAAGCGGATAACAAGGGTGAAGTCATCTCCAGTCCAAAAGTGCTAACCGCC
GACAAACAAACCGCCAGAATCATGTCAGGCACACAAATCCCTTATCAAGAAGCCTCTGCCAGTGGGGCGACCTCAACGAG
CTTTGTCGAAGCGGCATTGAGTCTTGAAGTGACCCCTAATATCACCCCTGAAGGTCGTATTGGCATGGATTTGAGTATTG
AAAATGGTTCACCAACTATCGTCAATGGTGCGACAGCGGTTTCTAAAGATTCGATTAAAACCAACGTGGTCGTCGATGAT
GGTCAAACGGTTGTGCTCGGTGGCGTGTTTAAAAATACCTTAGGTAACGATGTGACTAAAATCCCTTTCTTAGGCGATTT
ACCTTATGTTGATCGCTTCTTTAAACGCACCTCAAAAACCAACAATAAGCAAGAATTATTGATTTTTGTGACCCCAAAAT
TGGTGAATGACACAGGTCGTATCAATTAA

Domains

Predicted by InterProScan.

Secretin and TonB N terminus short domain (STN)

(372-418)

Bacterial type II and III secretion system protein (Secretin)

(622-775)

Bacterial type II/III secretion system short domain (Secretin_N)

(445-518)

AMIN domain (AMIN)

(48-131)

AMIN domain (AMIN)

(238-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

50.582

76.854

0.389
  pilQ Acinetobacter baumannii strain A118

49.097

77.877

0.382
  pilQ Acinetobacter baumannii D1279779

49.097

77.877

0.382
  pilQ Pseudomonas aeruginosa PAK

36.375

99.488

0.362

Multiple sequence alignment