Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   YHS_RS02880 Genome accession   NZ_CP024176
Coordinates   647940..648473 (+) Length   177 a.a.
NCBI ID   WP_099833607.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 642940..653473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS02865 (YHS_02870) pilM 645466..646518 (+) 1053 WP_099833605.1 pilus assembly protein PilM Machinery gene
  YHS_RS02870 (YHS_02875) pilN 646518..647189 (+) 672 WP_099833606.1 PilN domain-containing protein Machinery gene
  YHS_RS02875 (YHS_02880) comO/pilO 647192..647950 (+) 759 WP_198510467.1 type 4a pilus biogenesis protein PilO Machinery gene
  YHS_RS02880 (YHS_02885) comL/pilP 647940..648473 (+) 534 WP_099833607.1 pilus assembly protein PilP Machinery gene
  YHS_RS02885 (YHS_02890) comQ/pilQ 648491..650839 (+) 2349 WP_099833608.1 type IV pilus secretin family protein Machinery gene
  YHS_RS02890 (YHS_02895) - 650947..651483 (+) 537 WP_062334134.1 shikimate kinase -
  YHS_RS02895 (YHS_02900) aroB 651552..652649 (+) 1098 WP_099833609.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19333.34 Da        Isoelectric Point: 6.3638

>NTDB_id=211370 YHS_RS02880 WP_099833607.1 647940..648473(+) (comL/pilP) [Moraxella osloensis strain YHS]
MAINKKPLSICLALLALLSGCTDRVGLAEQQMQDIRNQPAQPVKPPPTPEVVQEFNYSASPLRSPFMPPSLMLQANQVQQ
MKGVRPDVSRLKEPLEQFELNELTYKGTMVSSSGEVYGLVQRPDGGIASVKVGNYMGKNEGRIAEITPTQINLIEIIPDS
RVGYVEKPNSIVAAVSQ

Nucleotide


Download         Length: 534 bp        

>NTDB_id=211370 YHS_RS02880 WP_099833607.1 647940..648473(+) (comL/pilP) [Moraxella osloensis strain YHS]
ATGGCAATTAATAAAAAACCGCTCTCTATTTGCTTAGCCCTATTAGCCCTCTTATCTGGCTGTACCGACCGTGTCGGTTT
GGCAGAGCAACAAATGCAGGACATCCGTAACCAGCCTGCGCAACCGGTAAAGCCACCACCGACACCCGAAGTGGTACAGG
AGTTTAATTATAGCGCTTCACCGCTGCGTAGTCCATTTATGCCGCCCAGTTTAATGCTGCAAGCCAATCAAGTACAGCAA
ATGAAAGGGGTGAGACCGGATGTGTCCCGACTCAAAGAGCCACTTGAACAATTTGAGTTGAATGAGCTTACCTATAAAGG
TACGATGGTGTCATCATCTGGCGAGGTGTATGGTCTTGTGCAACGCCCAGATGGGGGGATTGCCAGTGTCAAAGTGGGTA
ATTATATGGGTAAAAATGAGGGGCGTATTGCAGAGATTACCCCAACCCAAATTAACTTAATTGAAATCATACCAGACAGT
CGTGTCGGCTATGTCGAAAAACCAAACTCAATTGTTGCCGCAGTTAGTCAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(30-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

47.093

97.175

0.458
  pilP Acinetobacter baumannii D1279779

46.154

95.48

0.441