Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO/pilO   Type   Machinery gene
Locus tag   YHS_RS02875 Genome accession   NZ_CP024176
Coordinates   647192..647950 (+) Length   252 a.a.
NCBI ID   WP_198510467.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 642192..652950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS02860 (YHS_02865) - 642535..645264 (-) 2730 WP_099833604.1 penicillin-binding protein 1A -
  YHS_RS02865 (YHS_02870) pilM 645466..646518 (+) 1053 WP_099833605.1 pilus assembly protein PilM Machinery gene
  YHS_RS02870 (YHS_02875) pilN 646518..647189 (+) 672 WP_099833606.1 PilN domain-containing protein Machinery gene
  YHS_RS02875 (YHS_02880) comO/pilO 647192..647950 (+) 759 WP_198510467.1 type 4a pilus biogenesis protein PilO Machinery gene
  YHS_RS02880 (YHS_02885) comL/pilP 647940..648473 (+) 534 WP_099833607.1 pilus assembly protein PilP Machinery gene
  YHS_RS02885 (YHS_02890) comQ/pilQ 648491..650839 (+) 2349 WP_099833608.1 type IV pilus secretin family protein Machinery gene
  YHS_RS02890 (YHS_02895) - 650947..651483 (+) 537 WP_062334134.1 shikimate kinase -
  YHS_RS02895 (YHS_02900) aroB 651552..652649 (+) 1098 WP_099833609.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28616.81 Da        Isoelectric Point: 9.4260

>NTDB_id=211369 YHS_RS02875 WP_198510467.1 647192..647950(+) (comO/pilO) [Moraxella osloensis strain YHS]
MKLTNPLKRPKLVKKPVHITAKKSFDVKAFTESFKSLDQNNYGSWPVPVKVTVLLFMVAVIAFLTWFLPISTKRDEIAAA
EAEQQTLLDEYRQKESKARHLKEYQAQVSKMQSDFKELLNQLPKDTRISDLVDGINMVGVGSNIKFQDIKVEPEVSQEFF
IEQPIRIAALGDYHQFGSFISGLAKLPRIITLHDFEVTNPSPSLDKLPETNLVLNVKTYRSKELNEEELKKAQKDNQKNS
AGPDNKEANNGN

Nucleotide


Download         Length: 759 bp        

>NTDB_id=211369 YHS_RS02875 WP_198510467.1 647192..647950(+) (comO/pilO) [Moraxella osloensis strain YHS]
GTGAAATTAACCAATCCGCTAAAAAGACCGAAACTCGTCAAAAAACCCGTTCACATTACCGCAAAAAAATCGTTTGATGT
TAAAGCCTTTACCGAAAGCTTTAAATCCCTAGACCAAAATAATTATGGTAGCTGGCCTGTGCCTGTTAAGGTTACCGTAT
TGCTATTTATGGTTGCTGTTATCGCCTTTTTAACTTGGTTTTTGCCGATTAGTACCAAACGTGATGAGATTGCCGCTGCC
GAAGCCGAGCAGCAAACCTTGTTAGATGAATATCGCCAAAAAGAATCCAAAGCACGTCATTTAAAAGAATATCAGGCGCA
AGTATCAAAAATGCAGTCTGATTTTAAAGAACTGCTCAATCAATTACCCAAAGACACCCGTATTTCTGACTTGGTGGATG
GCATTAATATGGTTGGTGTGGGCAGTAACATTAAATTTCAGGATATCAAAGTTGAACCTGAAGTGTCCCAAGAGTTCTTT
ATTGAGCAGCCAATTCGTATTGCCGCTTTAGGAGATTATCACCAATTTGGCTCATTCATTAGTGGTCTAGCTAAACTACC
TCGGATTATTACCCTGCATGACTTTGAGGTCACCAACCCTAGTCCTAGCCTAGACAAGCTACCAGAAACCAATCTTGTTT
TGAACGTTAAAACTTATCGTTCAAAAGAGCTAAATGAAGAAGAATTAAAGAAGGCACAAAAAGATAATCAAAAAAATTCA
GCGGGACCTGACAATAAGGAAGCGAATAATGGCAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(78-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO/pilO Acinetobacter baylyi ADP1

45.175

90.476

0.409
  pilO Acinetobacter baumannii D1279779

48.02

80.159

0.385

Multiple sequence alignment