Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BSQ33_RS09095 Genome accession   NZ_CP018835
Coordinates   2015498..2016658 (+) Length   386 a.a.
NCBI ID   WP_420070609.1    Uniprot ID   -
Organism   Vibrio gazogenes strain ATCC 43942     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2010498..2021658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS09075 (BSQ33_09125) trkA 2011030..2012406 (-) 1377 WP_021021471.1 Trk system potassium transporter TrkA -
  BSQ33_RS09080 (BSQ33_09130) rsmB 2012485..2013771 (-) 1287 WP_027694357.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BSQ33_RS09085 (BSQ33_09135) fmt 2013823..2014788 (-) 966 WP_021021473.1 methionyl-tRNA formyltransferase -
  BSQ33_RS09090 (BSQ33_09140) def 2014800..2015321 (-) 522 WP_021021474.1 peptide deformylase -
  BSQ33_RS09095 (BSQ33_09145) dprA 2015498..2016658 (+) 1161 WP_420070609.1 DNA-processing protein DprA Machinery gene
  BSQ33_RS09100 (BSQ33_09150) - 2016664..2017137 (+) 474 WP_027694359.1 DUF494 family protein -
  BSQ33_RS09105 (BSQ33_09155) - 2017148..2017717 (+) 570 WP_088133893.1 type I DNA topoisomerase -
  BSQ33_RS09110 (BSQ33_09160) - 2017822..2018952 (-) 1131 WP_021021478.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BSQ33_RS09115 (BSQ33_09165) purE 2018958..2019443 (-) 486 WP_072963465.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BSQ33_RS09120 (BSQ33_09170) - 2019648..2020217 (+) 570 WP_420070610.1 Sua5/YciO/YrdC/YwlC family protein -
  BSQ33_RS09125 (BSQ33_09175) hemF 2020235..2021149 (+) 915 WP_021021481.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 42201.63 Da        Isoelectric Point: 6.8643

>NTDB_id=210780 BSQ33_RS09095 WP_420070609.1 2015498..2016658(+) (dprA) [Vibrio gazogenes strain ATCC 43942]
MYQSASHVTEHDRLLMWIKLCMTPRLGTQSLLKLLGKASLELLSRYSEKEWLALGLSSVQVSYLFSGAANQVAEDCLEWQ
MRGNHRHIVTYFSPEYPALLKEIPSPPPLLFVQGDITLLSVPQIAIVGSRHASMQGLQDAWHFASGLAQHQVAVTSGLAL
GIDGQAHLGAIEGGGKTIAVLGAGLERIYPARHRGLAERMLEQQSGVLVSEFCPSTPPKSMNFPRRNRIISGLSLGVLVI
EAAEKSGSLITARYAAEQNRDVFVIPGAIHQHGYRGSNALIRDGACLVQNIEQILSEVGTLSAWVKKEEKQEEKIQQNEL
FPPLIDDEELPFAEVLANVGVKATPVDILATRTHIPVHEVMRQLLELELSGHVIAVAGGYIRKGRG

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=210780 BSQ33_RS09095 WP_420070609.1 2015498..2016658(+) (dprA) [Vibrio gazogenes strain ATCC 43942]
ATGTACCAATCAGCCTCGCATGTTACAGAACATGACCGACTATTGATGTGGATAAAACTCTGCATGACGCCGCGTCTGGG
AACACAATCGTTGTTAAAGTTACTCGGCAAAGCATCGCTTGAGCTGTTGAGTCGTTATTCTGAAAAAGAGTGGCTTGCTT
TGGGACTCTCGTCTGTGCAGGTCTCTTATCTGTTCTCCGGAGCCGCGAATCAAGTGGCTGAAGATTGCCTTGAATGGCAA
ATGCGTGGCAATCATCGTCATATCGTGACTTATTTTTCACCGGAGTATCCGGCACTGTTGAAAGAAATTCCGTCGCCACC
ACCACTGTTGTTTGTGCAGGGAGATATTACGCTGCTATCCGTACCACAGATAGCCATTGTCGGTAGCCGACATGCGAGTA
TGCAAGGATTGCAAGATGCATGGCATTTTGCGAGTGGGCTTGCTCAGCATCAAGTGGCAGTGACCAGCGGGTTGGCGCTA
GGGATTGATGGACAGGCTCATCTGGGAGCAATTGAGGGGGGTGGTAAAACCATTGCTGTTTTAGGGGCTGGCTTAGAGCG
TATCTATCCGGCCCGGCATCGTGGGCTGGCTGAGCGGATGCTTGAACAGCAGTCCGGTGTTCTGGTGTCAGAATTTTGTC
CCTCAACACCGCCCAAATCAATGAACTTTCCTCGCCGTAACCGGATTATCAGTGGGTTATCTCTGGGAGTACTGGTGATT
GAAGCTGCAGAAAAGAGTGGGTCGTTGATTACCGCAAGGTATGCAGCTGAGCAAAATCGGGATGTTTTTGTGATCCCGGG
CGCGATTCATCAGCACGGTTATCGGGGAAGTAATGCACTAATTCGTGATGGCGCTTGCTTAGTTCAGAATATTGAACAGA
TACTCTCTGAAGTTGGTACGTTATCTGCTTGGGTAAAGAAAGAAGAGAAGCAAGAAGAGAAAATTCAGCAAAATGAGCTT
TTTCCGCCATTAATTGACGACGAAGAATTGCCATTTGCTGAAGTGTTAGCTAACGTAGGGGTAAAAGCGACGCCAGTTGA
TATTCTTGCAACGCGAACCCATATACCAGTTCATGAAGTGATGAGACAGCTACTAGAGCTGGAATTATCCGGGCACGTGA
TTGCAGTTGCTGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(84-289)

DprA winged helix domain (DprA_WH)

(322-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

57.105

96.632

0.552
  dprA Vibrio campbellii strain DS40M4

56.952

96.891

0.552
  dprA Legionella pneumophila strain ERS1305867

43.733

93.005

0.407
  dprA Glaesserella parasuis strain SC1401

42.091

96.632

0.407
  dprA Haemophilus influenzae Rd KW20

43.188

89.378

0.386
  dprA Neisseria meningitidis strain C311

36

100

0.373
  dprA Neisseria meningitidis MC58

36

100

0.373

Multiple sequence alignment