Detailed information NTG0020869

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: b2741
• Genome accession: NC_000913
• Coordinates: 2866559..2867551 (-)
• Length: 330 a.a.
• NCBI ID: NP_417221.1
• Uniprot ID: P13445
• Organism: Escherichia coli str. K-12 substr. MG1655
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2861559..2872551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
b2737	ygbK	2862335..2863501 (+)	1167	NP_417217.1	putative 3-oxo-tetronate kinase YgbK	-
b2738	ygbL	2863593..2864231 (+)	639	NP_417218.1	putative 3-oxo-tetronate 4-phosphate decarboxylase YgbL	-
b2739	ygbM	2864236..2865012 (+)	777	NP_417219.1	putative 2-oxo-tetronate isomerase YgbM	-
b2740	ygbN	2865101..2866465 (+)	1365	NP_417220.1	putative transporter YgbN	-
b2741	rpoS	2866559..2867551 (-)	993	NP_417221.1	RNA polymerase sigma factor RpoS	Regulator
b2742	nlpD	2867614..2868753 (-)	1140	NP_417222.1	murein hydrolase activator NlpD	-
b2743	pcm	2868893..2869519 (-)	627	NP_417223.1	protein-L-isoaspartate O-methyltransferase	-
b2744	umpG	2869513..2870274 (-)	762	NP_417224.1	broad specificity 5'(3')-nucleotidase and polyphosphatase	-
b2745	truD	2870255..2871304 (-)	1050	NP_417225.1	tRNA pseudouridine(13) synthase	-
b2746	ispF	2871301..2871780 (-)	480	NP_417226.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
b2747	ispD	2871780..2872490 (-)	711	NP_417227.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=20869 b2741 NP_417221.1 2866559..2867551(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=20869 b2741 NP_417221.1 2866559..2867551(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• PDB: 5IPL
• PDB: 5IPM
• PDB: 5IPN
• PDB: 6FI7
• PDB: 6IDO
• PDB: 6KJ6
• PDB: 6UTV
• PDB: 6UTW
• PDB: 6UTX
• PDB: 6UTY
• PDB: 6UTZ
• PDB: 6UU0
• PDB: 6UU1
• PDB: 6UU2
• PDB: 6UU3
• PDB: 6UU4
• PDB: 6UU5
• PDB: 6UU6
• PDB: 6UU7
• PDB: 6UU8
• PDB: 6UU9
• PDB: 6UUA
• PDB: 6UUB
• PDB: 6UUC

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715