Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | BS615_RS01615 | Genome accession | NZ_CP018421 |
| Coordinates | 340315..340788 (+) | Length | 157 a.a. |
| NCBI ID | WP_001214061.1 | Uniprot ID | A0A219CC01 |
| Organism | Acinetobacter baumannii strain XDR-BJ83 isolate male patient | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 335315..345788
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS615_RS01595 (BS615_01575) | - | 335779..337884 (-) | 2106 | WP_001117590.1 | RelA/SpoT family protein | - |
| BS615_RS20075 | - | 337924..338053 (-) | 130 | Protein_300 | hypothetical protein | - |
| BS615_RS01600 (BS615_01580) | rpoZ | 338092..338370 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| BS615_RS01605 (BS615_01585) | gmk | 338443..339072 (-) | 630 | WP_000015937.1 | guanylate kinase | - |
| BS615_RS01610 (BS615_01590) | ispH | 339195..340145 (+) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| BS615_RS01615 (BS615_01595) | fimU | 340315..340788 (+) | 474 | WP_001214061.1 | pilus assembly FimT family protein | Machinery gene |
| BS615_RS01620 (BS615_01600) | pilV | 340782..341342 (+) | 561 | WP_085916952.1 | type IV pilus modification protein PilV | Machinery gene |
| BS615_RS01625 (BS615_01605) | pilW | 341343..342344 (+) | 1002 | WP_000079200.1 | PilW family protein | Machinery gene |
| BS615_RS01630 (BS615_01610) | - | 342341..343158 (+) | 818 | Protein_307 | PilX N-terminal domain-containing pilus assembly protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16836.40 Da Isoelectric Point: 8.5355
>NTDB_id=208607 BS615_RS01615 WP_001214061.1 340315..340788(+) (fimU) [Acinetobacter baumannii strain XDR-BJ83 isolate male patient]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC
Nucleotide
Download Length: 474 bp
>NTDB_id=208607 BS615_RS01615 WP_001214061.1 340315..340788(+) (fimU) [Acinetobacter baumannii strain XDR-BJ83 isolate male patient]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
98.726 |
100 |
0.987 |