Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BSR55_RS01655 Genome accession   NZ_CP018259
Coordinates   361401..363572 (+) Length   723 a.a.
NCBI ID   WP_058971043.1    Uniprot ID   A0A8I1DH50
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356401..368572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS01635 (BSR55_01630) comM 358405..359463 (+) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene
  BSR55_RS01640 (BSR55_01635) pilN 359463..360104 (+) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  BSR55_RS01645 (BSR55_01640) comO 360101..360853 (+) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  BSR55_RS01650 (BSR55_01645) comL 360850..361380 (+) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  BSR55_RS01655 (BSR55_01650) pilQ 361401..363572 (+) 2172 WP_058971043.1 type IV pilus secretin PilQ Machinery gene
  BSR55_RS01660 (BSR55_01655) aroK 363609..364151 (+) 543 WP_004825383.1 shikimate kinase AroK -
  BSR55_RS01665 (BSR55_01660) aroB 364188..365267 (+) 1080 WP_100884390.1 3-dehydroquinate synthase -
  BSR55_RS01670 (BSR55_01665) - 365286..366155 (+) 870 WP_042089089.1 hypothetical protein -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 78566.15 Da        Isoelectric Point: 7.2148

>NTDB_id=207780 BSR55_RS01655 WP_058971043.1 361401..363572(+) (pilQ) [Acinetobacter bereziniae strain XH901]
MKKSLKNILIGDGKFMNSQLRQFTMATVAIAITQVAAAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLV
LDFDNAKQNISQASIPVASEEASTVDVAADDQRSRLTVNLKNSGAFTTRVEGNTFILKINNANQAPSLPSYVSSTVSKQN
QGIADIGFQRGNAGEGQVIVSLSGANTPVDVQQQGSKVVIRTLGNKIPTHLLRRLNVNDFATPVSSVDAYNDGSNGVITI
QSSGSYEYMAFQAENKLTVSLKRPAENKVARPSSSQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKALAQSVKLAPIQTEYIQLNYTKVADVLKLLEDSRN
PKGAEANRTTNTESLALESLLSLRGSAVADTRTNTLIINDTANNIDKIRKMIDLLDVSIKQVMVEARIVRATTDFTKEMG
VKWGILSQGINKNNDLLVGGSDQTLWDLRTPDDDGKYTITRPDNLNVDLGVTTTGASKIAFGLISMSDFMLDLELSALQS
DGYGEVISTPKVMTADKQKAKVSSGQQIPYQTTQTAGGAATATTSFKDALLSLDVTPSITPDGKVQMQLNITSDSPAGTA
PNGEIILNKNEVNTNVLVDNGETVVLGGIFEQETKSSQTKVPFLGDIPYLGRLFRKDLKSDNKRELLIFVTPRIVNDSRT
RNH

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=207780 BSR55_RS01655 WP_058971043.1 361401..363572(+) (pilQ) [Acinetobacter bereziniae strain XH901]
ATGAAAAAGAGTTTGAAAAATATCTTGATTGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGAC
GGTCGCAATTGCAATTACACAAGTTGCAGCAGCACAAACCACGATGACCAACATTGTTCCGATGAAAATACCGGGGCAAG
GGACAGAAATTCGTGTCATGTTTAATGGTCTTCCTCCGCAGCCACAAGCCTATCAATTGGATAATCCATCTCGTTTAGTA
TTGGATTTTGACAATGCTAAACAAAATATTAGCCAAGCATCTATTCCCGTAGCGAGTGAGGAGGCTTCAACAGTCGATGT
CGCTGCAGATGATCAACGTTCTCGGTTAACGGTAAATTTAAAAAATAGTGGTGCTTTTACAACACGTGTTGAAGGCAATA
CTTTTATTTTAAAAATTAATAATGCCAATCAAGCACCGAGCTTACCAAGTTATGTATCTTCGACGGTCAGTAAGCAAAAT
CAAGGGATTGCTGATATTGGCTTCCAACGTGGAAATGCTGGCGAAGGACAAGTAATTGTGAGCCTTTCGGGTGCAAATAC
CCCAGTGGATGTCCAGCAGCAAGGCAGTAAGGTCGTTATTCGAACATTGGGAAATAAAATTCCTACACATTTATTGCGTC
GTTTAAATGTCAATGATTTTGCAACACCTGTCTCTAGCGTAGACGCTTATAACGACGGTTCCAATGGTGTTATCACCATT
CAATCATCGGGTAGCTATGAATATATGGCTTTCCAAGCTGAAAATAAATTAACAGTCAGCTTGAAACGACCTGCAGAAAA
TAAGGTGGCTCGCCCAAGTTCAAGCCAATCTTATACAGGCAAGAAAATATCGCTAGATTTCCAAGATATTGAAGTCCGTC
GAGTGTTGCAGTTATTGGCAGACTTTACTGGCATCAATATGGTGGCTGCTGATTCGGTACAAGGCAATATCACCCTGCGT
TTGAAAGATGTGCCTTGGGATCAAGCTTTAGACATTATCCTAAAAACAAAGAATTTGGATAAACGCCGTAATGGGAGTGT
GATTTGGATTGCGCCTGTAACTGAGTTAATTAAAGCGGAAGAGGATGAAGCAAAGGCATTAGCACAAAGTGTAAAATTAG
CACCTATTCAAACTGAATATATTCAGCTGAATTACACCAAAGTGGCAGATGTTTTGAAATTACTGGAAGACTCTCGAAAT
CCGAAAGGGGCAGAAGCAAATCGAACCACCAATACAGAATCTTTAGCATTGGAAAGTCTTTTAAGTTTAAGAGGCAGTGC
AGTAGCTGATACACGAACAAATACTTTAATCATCAATGATACTGCGAATAATATTGATAAAATTCGTAAGATGATTGACT
TGCTTGATGTTTCTATTAAGCAAGTCATGGTTGAAGCGCGAATTGTACGTGCTACAACAGATTTTACCAAAGAAATGGGC
GTGAAATGGGGAATTCTATCTCAGGGGATTAACAAAAATAATGACCTTTTGGTGGGAGGGAGTGATCAAACCCTATGGGA
TTTAAGAACGCCAGATGATGATGGTAAATATACCATTACACGACCTGATAACTTGAATGTAGACCTTGGTGTTACAACAA
CGGGTGCGAGTAAAATAGCTTTTGGTTTAATCAGTATGTCTGATTTTATGTTGGACTTGGAGTTATCTGCTTTGCAATCT
GATGGGTATGGTGAAGTCATTTCAACACCTAAAGTGATGACTGCTGATAAACAAAAAGCCAAAGTTTCATCAGGTCAACA
AATTCCTTATCAAACAACACAAACTGCTGGTGGTGCAGCAACAGCAACCACATCATTTAAAGATGCATTATTAAGTCTGG
ATGTAACACCTAGCATTACCCCTGATGGTAAAGTGCAAATGCAGCTTAATATTACCAGCGACTCACCAGCAGGCACAGCA
CCTAATGGAGAAATTATTCTGAATAAGAATGAGGTTAATACCAATGTCTTGGTGGATAATGGTGAAACTGTAGTTTTGGG
TGGGATTTTTGAGCAAGAAACTAAAAGCAGCCAAACTAAAGTACCATTCTTAGGAGATATACCTTATCTTGGGCGTTTAT
TCCGTAAAGATCTAAAATCTGATAATAAACGTGAACTGCTAATCTTTGTGACACCAAGAATTGTTAATGACAGTCGTACG
AGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(310-352)

AMIN domain (AMIN)

(55-137)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-461)

Bacterial type II and III secretion system protein (Secretin)

(557-715)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.416

100

0.737
  pilQ Acinetobacter baumannii strain A118

73.416

100

0.737
  comQ Acinetobacter baylyi ADP1

70.506

98.479

0.694
  pilQ Pseudomonas aeruginosa PAK

38.057

100

0.39

Multiple sequence alignment