Detailed information    

insolico Bioinformatically predicted

Overview


Name   comL   Type   Machinery gene
Locus tag   BSR55_RS01650 Genome accession   NZ_CP018259
Coordinates   360850..361380 (+) Length   176 a.a.
NCBI ID   WP_005034344.1    Uniprot ID   A0A0A8TMR9
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 355850..366380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS01635 (BSR55_01630) comM 358405..359463 (+) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene
  BSR55_RS01640 (BSR55_01635) pilN 359463..360104 (+) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  BSR55_RS01645 (BSR55_01640) comO 360101..360853 (+) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  BSR55_RS01650 (BSR55_01645) comL 360850..361380 (+) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  BSR55_RS01655 (BSR55_01650) pilQ 361401..363572 (+) 2172 WP_058971043.1 type IV pilus secretin PilQ Machinery gene
  BSR55_RS01660 (BSR55_01655) aroK 363609..364151 (+) 543 WP_004825383.1 shikimate kinase AroK -
  BSR55_RS01665 (BSR55_01660) aroB 364188..365267 (+) 1080 WP_100884390.1 3-dehydroquinate synthase -
  BSR55_RS01670 (BSR55_01665) - 365286..366155 (+) 870 WP_042089089.1 hypothetical protein -

Sequence


Protein


Download         Length: 176 a.a.        Molecular weight: 19462.49 Da        Isoelectric Point: 7.8147

>NTDB_id=207779 BSR55_RS01650 WP_005034344.1 360850..361380(+) (comL) [Acinetobacter bereziniae strain XH901]
MKKHNKIICGISFTLLLVGCDSRIDAVNQEMANIRSQTPLPIEPAPVFNPVPSFNYSAQQLRSPFLPSSLANELKVMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGNAGQTVGLIQTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPVD

Nucleotide


Download         Length: 531 bp        

>NTDB_id=207779 BSR55_RS01650 WP_005034344.1 360850..361380(+) (comL) [Acinetobacter bereziniae strain XH901]
ATGAAAAAACACAATAAAATAATCTGTGGAATCTCATTCACTTTGTTGTTGGTTGGTTGTGACTCTAGGATTGATGCCGT
CAATCAGGAAATGGCAAATATTCGTAGTCAAACACCTTTGCCGATTGAACCAGCACCTGTATTTAATCCTGTGCCAAGTT
TTAATTATTCTGCACAACAATTGCGTAGTCCATTCTTACCAAGTTCGTTGGCAAATGAATTAAAGGTGATGTCAGGAAAA
CGAGTGTATCCGAATTTCTCTAGACAACCGCAGCCACTTGAAAGTTATCCTTTAGAGTCGTTGACACTGAAAGGAAGTAT
GAAGGGCAATGCAGGACAAACGGTAGGATTAATCCAAACACCAGATGGTGAAATTGAACGTGTTCAACTGGGCAATTACA
TGGGGATGAATCAGGGTCGAATTATTGAAATTACACCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATCGAAAGACCACGCAGTCTAGTTCTAATTGGTCCAGTGGATTAA

Domains


Predicted by InterproScan.

(28-171)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A8TMR9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Acinetobacter baylyi ADP1

74.269

97.159

0.722

  pilP Acinetobacter baumannii D1279779

72.832

98.295

0.716


Multiple sequence alignment