Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   BSR55_RS01645 Genome accession   NZ_CP018259
Coordinates   360101..360853 (+) Length   250 a.a.
NCBI ID   WP_004825387.1    Uniprot ID   A0A0A8TTL1
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355101..365853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS01630 (BSR55_01625) ponA 355701..358241 (-) 2541 WP_100884389.1 penicillin-binding protein PBP1a -
  BSR55_RS01635 (BSR55_01630) comM 358405..359463 (+) 1059 WP_009587163.1 pilus assembly protein PilM Machinery gene
  BSR55_RS01640 (BSR55_01635) pilN 359463..360104 (+) 642 WP_004825390.1 PilN domain-containing protein Machinery gene
  BSR55_RS01645 (BSR55_01640) comO 360101..360853 (+) 753 WP_004825387.1 type 4a pilus biogenesis protein PilO Machinery gene
  BSR55_RS01650 (BSR55_01645) comL 360850..361380 (+) 531 WP_005034344.1 pilus assembly protein PilP Machinery gene
  BSR55_RS01655 (BSR55_01650) pilQ 361401..363572 (+) 2172 WP_058971043.1 type IV pilus secretin PilQ Machinery gene
  BSR55_RS01660 (BSR55_01655) aroK 363609..364151 (+) 543 WP_004825383.1 shikimate kinase AroK -
  BSR55_RS01665 (BSR55_01660) aroB 364188..365267 (+) 1080 WP_100884390.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28361.04 Da        Isoelectric Point: 4.9789

>NTDB_id=207778 BSR55_RS01645 WP_004825387.1 360101..360853(+) (comO) [Acinetobacter bereziniae strain XH901]
MSREDFEQLDSSVNDAPKKNKMTVEKFFQQFNTLDMNNYGSWPLSVKITCWIFLFFVVCAIGYFLAVRPKLDAIDQARTV
EQNLLNEFKEKDSKLRNLQQYQAQLQQMEANFNQQLEQLPKETEIPSLVEDINVTGVSSGLKFKNIRLEPEVKQEFFIEQ
PISIDATGDYHSFGTFVSSVAALPRIVTLHDFTITGTASQDKKSDVPVIDYTIKAKTYRYIGADEQKAQKTVNQTNPAAP
STPQQGGTPQ

Nucleotide


Download         Length: 753 bp        

>NTDB_id=207778 BSR55_RS01645 WP_004825387.1 360101..360853(+) (comO) [Acinetobacter bereziniae strain XH901]
ATGAGTCGTGAAGATTTTGAGCAATTAGATTCATCGGTAAATGATGCTCCAAAAAAGAATAAAATGACAGTTGAGAAATT
TTTTCAACAGTTCAATACTTTGGATATGAACAACTATGGTAGTTGGCCGCTATCGGTAAAAATTACTTGTTGGATATTTT
TGTTCTTTGTGGTTTGTGCAATTGGCTATTTTCTTGCGGTGAGACCGAAGCTGGATGCAATTGATCAGGCGCGCACAGTT
GAACAGAATCTACTGAATGAATTTAAAGAAAAAGACTCTAAGTTACGAAATTTGCAACAATATCAAGCCCAGTTACAACA
AATGGAAGCCAATTTCAATCAACAATTGGAACAGTTGCCAAAAGAAACTGAAATTCCGAGTTTGGTTGAAGATATTAACG
TGACTGGGGTGAGTTCAGGGCTAAAATTTAAAAATATCAGACTTGAACCTGAAGTGAAGCAAGAGTTCTTTATTGAACAA
CCTATTTCCATTGATGCGACAGGGGATTATCACTCATTTGGTACTTTCGTCAGTAGCGTCGCTGCTTTACCACGTATTGT
TACTTTGCATGATTTCACCATTACAGGAACTGCCAGTCAGGATAAAAAATCTGATGTTCCTGTGATTGACTATACCATTA
AGGCAAAAACCTATCGCTATATTGGTGCTGATGAACAGAAAGCTCAAAAAACTGTGAATCAGACAAATCCAGCTGCACCA
TCGACACCACAGCAAGGAGGGACACCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TTL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.512

98.4

0.684
  pilO Acinetobacter baumannii D1279779

71.179

91.6

0.652

Multiple sequence alignment