Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BSR19_RS07570 Genome accession   NZ_CP018187
Coordinates   1684164..1686134 (-) Length   656 a.a.
NCBI ID   WP_002884208.1    Uniprot ID   J7TF98
Organism   Streptococcus salivarius strain ICDC2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1679164..1691134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS07550 (BSR19_07665) amiF 1679667..1680596 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  BSR19_RS07555 (BSR19_07670) amiE 1680589..1681674 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  BSR19_RS07560 (BSR19_07675) amiD 1681684..1682610 (-) 927 WP_156246942.1 oligopeptide ABC transporter permease OppC Regulator
  BSR19_RS07565 (BSR19_07680) amiC 1682610..1684103 (-) 1494 WP_156246943.1 ABC transporter permease Regulator
  BSR19_RS07570 (BSR19_07685) amiA 1684164..1686134 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  BSR19_RS07575 (BSR19_07690) pta 1686370..1687353 (-) 984 WP_037598296.1 phosphate acetyltransferase -
  BSR19_RS07580 (BSR19_07695) - 1687369..1688265 (-) 897 WP_002891441.1 RluA family pseudouridine synthase -
  BSR19_RS07585 (BSR19_07700) - 1688262..1689098 (-) 837 WP_002884507.1 NAD kinase -
  BSR19_RS07590 (BSR19_07705) - 1689070..1689744 (-) 675 WP_002884702.1 GTP pyrophosphokinase family protein -
  BSR19_RS07595 (BSR19_07710) - 1689840..1690415 (+) 576 WP_022496737.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71955.73 Da        Isoelectric Point: 4.8199

>NTDB_id=206862 BSR19_RS07570 WP_002884208.1 1684164..1686134(-) (amiA) [Streptococcus salivarius strain ICDC2]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKIAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFILKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYASVEKNYKDNIYYTAPGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKETLQADGVQFPIHLDLPVDQSSKINVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDIQN
ATLNAANAAAEDWDISNGVIWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=206862 BSR19_RS07570 WP_002884208.1 1684164..1686134(-) (amiA) [Streptococcus salivarius strain ICDC2]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTCGCCCTTCTAAGTGTTGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGATCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACAAAAATTGCTGTAACTAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAGTTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGTCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCGGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCATTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGTTCTAACTATGCTTCAGTTGAGAAAAACTATAAAGATAATATTTATT
ACACAGCACCAGGTGCATCTACATCGGCTATTGGTGTGAATATTGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTAAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGAAACTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAAGTTCTAAAATCAATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAGCAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTATCATCTGATGACATACAAAAT
GCAACCCTTAACGCGGCTAATGCAGCGGCAGAAGACTGGGATATTTCAAACGGTGTCATTTGGGGTCCAGACTATCAAGA
CCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGGTATGATGATCCAAACA
ATGCTGCCGCAGCTCAAGTAGGTCTTAAAGATTATGACGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATGCAGGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAGGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TF98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

99.085

100

0.991
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904

Multiple sequence alignment