Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   BSR19_RS07555 Genome accession   NZ_CP018187
Coordinates   1680589..1681674 (-) Length   361 a.a.
NCBI ID   WP_049554143.1    Uniprot ID   A0AB37DBK0
Organism   Streptococcus salivarius strain ICDC2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1675589..1686674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS07525 (BSR19_07640) - 1675952..1676770 (-) 819 WP_156246938.1 Cof-type HAD-IIB family hydrolase -
  BSR19_RS07530 (BSR19_07645) - 1676763..1677557 (-) 795 WP_156246939.1 HAD-IIB family hydrolase -
  BSR19_RS07535 (BSR19_07650) - 1677739..1678116 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  BSR19_RS07540 (BSR19_07655) - 1678121..1678819 (+) 699 WP_156246941.1 ABC transporter ATP-binding protein -
  BSR19_RS07545 (BSR19_07660) - 1678831..1679616 (+) 786 WP_021143813.1 hypothetical protein -
  BSR19_RS07550 (BSR19_07665) amiF 1679667..1680596 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  BSR19_RS07555 (BSR19_07670) amiE 1680589..1681674 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  BSR19_RS07560 (BSR19_07675) amiD 1681684..1682610 (-) 927 WP_156246942.1 oligopeptide ABC transporter permease OppC Regulator
  BSR19_RS07565 (BSR19_07680) amiC 1682610..1684103 (-) 1494 WP_156246943.1 ABC transporter permease Regulator
  BSR19_RS07570 (BSR19_07685) amiA 1684164..1686134 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39876.52 Da        Isoelectric Point: 4.6482

>NTDB_id=206859 BSR19_RS07555 WP_049554143.1 1680589..1681674(-) (amiE) [Streptococcus salivarius strain ICDC2]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVASGSIDYRGQDL
TKLKSHQDWASIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACHPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=206859 BSR19_RS07555 WP_049554143.1 1680589..1681674(-) (amiE) [Streptococcus salivarius strain ICDC2]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
CATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACTAAGACTTTCACAGGGATGCTTGAAGATAATGGTCGTGTCGCTAGTGGTTCGATTGATTATCGCGGTCAAGATTTG
ACTAAGCTTAAGAGTCACCAAGATTGGGCATCTATTCGTGGGGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAATGAGTATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCATCCAGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATCGACCTCTTGAAATCACTCAAAGAGGAGTACGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGATAAGGTTGCTGTTATGTATGCTGGTGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
CGATGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCGGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAGATTGACTTCGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.169

100

0.992

  amiE Streptococcus thermophilus LMG 18311

96.399

100

0.964

  amiE Streptococcus thermophilus LMD-9

96.399

100

0.964

  oppD Streptococcus mutans UA159

54.441

96.676

0.526


Multiple sequence alignment