Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   BSR19_RS07550 Genome accession   NZ_CP018187
Coordinates   1679667..1680596 (-) Length   309 a.a.
NCBI ID   WP_022496727.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674667..1685596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS07525 (BSR19_07640) - 1675952..1676770 (-) 819 WP_156246938.1 Cof-type HAD-IIB family hydrolase -
  BSR19_RS07530 (BSR19_07645) - 1676763..1677557 (-) 795 WP_156246939.1 HAD-IIB family hydrolase -
  BSR19_RS07535 (BSR19_07650) - 1677739..1678116 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  BSR19_RS07540 (BSR19_07655) - 1678121..1678819 (+) 699 WP_156246941.1 ABC transporter ATP-binding protein -
  BSR19_RS07545 (BSR19_07660) - 1678831..1679616 (+) 786 WP_021143813.1 hypothetical protein -
  BSR19_RS07550 (BSR19_07665) amiF 1679667..1680596 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  BSR19_RS07555 (BSR19_07670) amiE 1680589..1681674 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  BSR19_RS07560 (BSR19_07675) amiD 1681684..1682610 (-) 927 WP_156246942.1 oligopeptide ABC transporter permease OppC Regulator
  BSR19_RS07565 (BSR19_07680) amiC 1682610..1684103 (-) 1494 WP_156246943.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35004.12 Da        Isoelectric Point: 7.0886

>NTDB_id=206858 BSR19_RS07550 WP_022496727.1 1679667..1680596(-) (amiF) [Streptococcus salivarius strain ICDC2]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYNPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=206858 BSR19_RS07550 WP_022496727.1 1679667..1680596(-) (amiF) [Streptococcus salivarius strain ICDC2]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCCGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCTGACTTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTATCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATAATCCAAACCAACACGACTATTCTGTCGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.676

100

0.997
  amiF Streptococcus thermophilus LMG 18311

97.735

100

0.977
  amiF Streptococcus thermophilus LMD-9

97.411

100

0.974

Multiple sequence alignment