Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ47_RS05090 Genome accession   NZ_CP023388
Coordinates   978294..978770 (-) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain 1105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 973294..983770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS05055 (CNQ47_05050) - 974872..975042 (-) 171 Protein_935 IS110 family transposase -
  CNQ47_RS05060 (CNQ47_05055) - 975385..976227 (-) 843 WP_001519083.1 DUF4942 domain-containing protein -
  CNQ47_RS05065 (CNQ47_05060) - 976312..976509 (-) 198 WP_001519084.1 DUF957 domain-containing protein -
  CNQ47_RS05070 (CNQ47_05065) - 976521..977009 (-) 489 WP_001519085.1 DUF5983 family protein -
  CNQ47_RS05075 (CNQ47_05070) - 977006..977383 (-) 378 WP_001683029.1 TA system toxin CbtA family protein -
  CNQ47_RS05080 (CNQ47_05075) cbeA 977473..977841 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CNQ47_RS05085 (CNQ47_05080) - 978004..978225 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  CNQ47_RS05090 (CNQ47_05085) radC 978294..978770 (-) 477 WP_001186727.1 RadC family protein Machinery gene
  CNQ47_RS05095 (CNQ47_05090) - 978786..979265 (-) 480 WP_019842849.1 antirestriction protein -
  CNQ47_RS05105 (CNQ47_05100) - 979604..980422 (-) 819 WP_021524998.1 DUF932 domain-containing protein -
  CNQ47_RS05115 (CNQ47_05110) - 980512..980745 (-) 234 WP_001278282.1 DUF905 family protein -
  CNQ47_RS05120 (CNQ47_05115) - 980751..981428 (-) 678 WP_001519094.1 hypothetical protein -
  CNQ47_RS05125 (CNQ47_05120) - 981576..982256 (-) 681 WP_001282920.1 WYL domain-containing protein -
  CNQ47_RS05130 (CNQ47_05125) - 982458..983342 (-) 885 WP_016237373.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=206860 CNQ47_RS05090 WP_001186727.1 978294..978770(-) (radC) [Escherichia coli strain 1105]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206860 CNQ47_RS05090 WP_001186727.1 978294..978770(-) (radC) [Escherichia coli strain 1105]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAATCGCACAGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment