Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   BSR19_RS07565 Genome accession   NZ_CP018187
Coordinates   1682610..1684103 (-) Length   497 a.a.
NCBI ID   WP_156246943.1    Uniprot ID   A0AB37DB84
Organism   Streptococcus salivarius strain ICDC2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677610..1689103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS07535 (BSR19_07650) - 1677739..1678116 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  BSR19_RS07540 (BSR19_07655) - 1678121..1678819 (+) 699 WP_156246941.1 ABC transporter ATP-binding protein -
  BSR19_RS07545 (BSR19_07660) - 1678831..1679616 (+) 786 WP_021143813.1 hypothetical protein -
  BSR19_RS07550 (BSR19_07665) amiF 1679667..1680596 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  BSR19_RS07555 (BSR19_07670) amiE 1680589..1681674 (-) 1086 WP_049554143.1 ABC transporter ATP-binding protein Regulator
  BSR19_RS07560 (BSR19_07675) amiD 1681684..1682610 (-) 927 WP_156246942.1 oligopeptide ABC transporter permease OppC Regulator
  BSR19_RS07565 (BSR19_07680) amiC 1682610..1684103 (-) 1494 WP_156246943.1 ABC transporter permease Regulator
  BSR19_RS07570 (BSR19_07685) amiA 1684164..1686134 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  BSR19_RS07575 (BSR19_07690) pta 1686370..1687353 (-) 984 WP_037598296.1 phosphate acetyltransferase -
  BSR19_RS07580 (BSR19_07695) - 1687369..1688265 (-) 897 WP_002891441.1 RluA family pseudouridine synthase -
  BSR19_RS07585 (BSR19_07700) - 1688262..1689098 (-) 837 WP_002884507.1 NAD kinase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55955.74 Da        Isoelectric Point: 10.0333

>NTDB_id=206861 BSR19_RS07565 WP_156246943.1 1682610..1684103(-) (amiC) [Streptococcus salivarius strain ICDC2]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQEKAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKRISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=206861 BSR19_RS07565 WP_156246943.1 1682610..1684103(-) (amiC) [Streptococcus salivarius strain ICDC2]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTACAGGAGAAAGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAGGCTATCTACCAAAAATATGTGGATAGTTTGGGTCA
TGGCTGGCGTTTGCATCAGTTTAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACACACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACGAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACGTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACCCAAGGTCAAGGACAAACGCAAAGCTCAGAGGTCAACTTCCCTACTGGTAAGAGAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCGACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAATACCCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGATTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCGGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATTCCAGCTTCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACGATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATT
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

97.787

100

0.978
  amiC Streptococcus thermophilus LMG 18311

96.781

100

0.968
  amiC Streptococcus thermophilus LMD-9

96.378

100

0.964

Multiple sequence alignment