Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   BSR19_RS01505 Genome accession   NZ_CP018187
Coordinates   278660..279559 (+) Length   299 a.a.
NCBI ID   WP_049545716.1    Uniprot ID   A0AB37D894
Organism   Streptococcus salivarius strain ICDC2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 273660..284559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS01485 (BSR19_01485) trkA 274825..276174 (-) 1350 WP_060973157.1 Trk system potassium transporter TrkA -
  BSR19_RS01490 (BSR19_01490) - 276452..276961 (+) 510 WP_021143543.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  BSR19_RS01495 (BSR19_01495) - 277272..277829 (+) 558 WP_049545714.1 ECF transporter S component -
  BSR19_RS01500 (BSR19_01500) - 277832..278482 (+) 651 WP_049545715.1 phosphatase PAP2 family protein -
  BSR19_RS01505 (BSR19_01505) comR 278660..279559 (+) 900 WP_049545716.1 helix-turn-helix transcriptional regulator Regulator
  BSR19_RS01510 (BSR19_01510) comA 279734..281830 (+) 2097 WP_002889921.1 peptide cleavage/export ABC transporter Regulator
  BSR19_RS01515 (BSR19_01515) - 281941..282273 (+) 333 WP_002886546.1 DUF805 domain-containing protein -
  BSR19_RS01520 (BSR19_01520) - 282324..283715 (-) 1392 WP_156246365.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35185.64 Da        Isoelectric Point: 5.3732

>NTDB_id=206830 BSR19_RS01505 WP_049545716.1 278660..279559(+) (comR) [Streptococcus salivarius strain ICDC2]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMTDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=206830 BSR19_RS01505 WP_049545716.1 278660..279559(+) (comR) [Streptococcus salivarius strain ICDC2]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCGCTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGACCGATTTATTGGATCATGATAATATCACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTCTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTATGAGAAATTCTTTGAACTTCTTCCAGAAGAAGAATTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCTAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTTATTGACTACTATTTCTTCCATCTTTATGGAAGAAAACAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTCTATAATATTGTTTTGTTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCCAAATATGAACTTCTTCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTACTAGAAGAAAGTATAAAGGCAGGTA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

99.666

100

0.997
  comR Streptococcus salivarius SK126

98.328

100

0.983
  comR Streptococcus thermophilus LMG 18311

95.652

100

0.957
  comR Streptococcus thermophilus LMD-9

94.983

100

0.95
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421

Multiple sequence alignment