Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CNQ48_RS05980 Genome accession   NZ_CP023386
Coordinates   1188159..1188674 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 1190     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183159..1193674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ48_RS05935 (CNQ48_05935) csrA 1183913..1184098 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CNQ48_RS05965 (CNQ48_05965) yqaB 1185389..1185955 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CNQ48_RS05970 (CNQ48_05970) yqaA 1185952..1186380 (+) 429 WP_001287455.1 YqaA family protein -
  CNQ48_RS05975 (CNQ48_05975) gshA 1186453..1188009 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CNQ48_RS05980 (CNQ48_05980) luxS 1188159..1188674 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CNQ48_RS05985 (CNQ48_05985) emrB 1188738..1190276 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CNQ48_RS05990 (CNQ48_05990) emrA 1190293..1191465 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CNQ48_RS05995 (CNQ48_05995) emrR 1191592..1192122 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CNQ48_RS06000 (CNQ48_06000) ygaH 1192213..1192548 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CNQ48_RS06005 (CNQ48_06005) ygaZ 1192538..1193275 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=206782 CNQ48_RS05980 WP_001130211.1 1188159..1188674(+) (luxS) [Escherichia coli strain 1190]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=206782 CNQ48_RS05980 WP_001130211.1 1188159..1188674(+) (luxS) [Escherichia coli strain 1190]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGTGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment