Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CNQ48_RS06510 Genome accession   NZ_CP023386
Coordinates   1276851..1277588 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 1190     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271851..1282588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ48_RS06480 (CNQ48_06480) yfiL 1272008..1272373 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CNQ48_RS06485 (CNQ48_06485) aroF 1272582..1273652 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CNQ48_RS06490 (CNQ48_06490) tyrA 1273663..1274784 (+) 1122 WP_000225222.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CNQ48_RS06495 (CNQ48_06495) pheA 1274828..1275988 (-) 1161 WP_000200110.1 bifunctional chorismate mutase/prephenate dehydratase -
  CNQ48_RS25620 pheL 1276088..1276135 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CNQ48_RS06500 (CNQ48_06500) raiA 1276239..1276580 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CNQ48_RS06510 (CNQ48_06510) comL 1276851..1277588 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CNQ48_RS06515 (CNQ48_06515) rluD 1277723..1278703 (+) 981 WP_000079109.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CNQ48_RS06520 (CNQ48_06520) yfiH 1278700..1279431 (+) 732 WP_000040165.1 purine nucleoside phosphorylase YfiH -
  CNQ48_RS06525 (CNQ48_06525) clpC 1279561..1282134 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=206783 CNQ48_RS06510 WP_000197686.1 1276851..1277588(-) (comL) [Escherichia coli strain 1190]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=206783 CNQ48_RS06510 WP_000197686.1 1276851..1277588(-) (comL) [Escherichia coli strain 1190]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTAGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment