Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BSF20_RS01335 Genome accession   NZ_CP018152
Coordinates   243503..243694 (-) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 238503..248694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS01310 (BSF20_01285) - 238859..239845 (-) 987 WP_003155054.1 ABC transporter ATP-binding protein -
  BSF20_RS01315 (BSF20_01290) - 240019..240804 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  BSF20_RS01320 (BSF20_01295) fabF 240888..242126 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  BSF20_RS01325 (BSF20_01300) - 242149..243087 (-) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  BSF20_RS01330 (BSF20_01305) - 243255..243473 (+) 219 WP_044053097.1 hypothetical protein -
  BSF20_RS01335 (BSF20_01310) comZ 243503..243694 (-) 192 WP_003155061.1 ComZ family protein Regulator
  BSF20_RS01340 (BSF20_01315) med 243707..244660 (-) 954 WP_044053096.1 BMP family ABC transporter substrate-binding protein Regulator
  BSF20_RS01345 (BSF20_01320) - 244750..245316 (-) 567 WP_003155065.1 hypothetical protein -
  BSF20_RS01350 (BSF20_01325) - 245399..246133 (-) 735 WP_014304780.1 hypothetical protein -
  BSF20_RS01360 (BSF20_01335) - 246394..246579 (+) 186 WP_003155069.1 YjzD family protein -
  BSF20_RS01365 (BSF20_01340) - 246615..246794 (-) 180 WP_044053095.1 YjzC family protein -
  BSF20_RS01370 (BSF20_01345) argF 246870..247841 (-) 972 WP_044053094.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=206496 BSF20_RS01335 WP_003155061.1 243503..243694(-) (comZ) [Bacillus amyloliquefaciens strain LM2303]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=206496 BSF20_RS01335 WP_003155061.1 243503..243694(-) (comZ) [Bacillus amyloliquefaciens strain LM2303]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794

Multiple sequence alignment