Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | BMJ42_RS04265 | Genome accession | NZ_CP018136 |
| Coordinates | 745559..746149 (+) | Length | 196 a.a. |
| NCBI ID | WP_000613477.1 | Uniprot ID | A0A064BX72 |
| Organism | Streptococcus pneumoniae strain SP49 | ||
| Function | degradation of ComX; degradation of ComW (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 744200..758437 | 745559..746149 | within | 0 |
Gene organization within MGE regions
Location: 744200..758437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BMJ42_RS04255 (BMJ42_00797) | - | 744200..744667 (+) | 468 | WP_000136976.1 | deoxycytidylate deaminase | - |
| BMJ42_RS04260 (BMJ42_00798) | upp | 744756..745385 (+) | 630 | WP_000515974.1 | uracil phosphoribosyltransferase | - |
| BMJ42_RS04265 (BMJ42_00799) | clpP | 745559..746149 (+) | 591 | WP_000613477.1 | ATP-dependent Clp protease proteolytic subunit ClpP | Regulator |
| BMJ42_RS04275 (BMJ42_00800) | - | 746228..746476 (+) | 249 | WP_000462126.1 | YlbG family protein | - |
| BMJ42_RS04280 (BMJ42_00801) | - | 746578..747738 (+) | 1161 | WP_000726146.1 | ABC transporter substrate-binding protein | - |
| BMJ42_RS04285 (BMJ42_00802) | - | 748006..748875 (+) | 870 | WP_000941421.1 | branched-chain amino acid ABC transporter permease | - |
| BMJ42_RS04290 (BMJ42_00803) | - | 748879..749835 (+) | 957 | WP_000662293.1 | branched-chain amino acid ABC transporter permease | - |
| BMJ42_RS04295 (BMJ42_00804) | - | 749835..750599 (+) | 765 | WP_001186007.1 | ABC transporter ATP-binding protein | - |
| BMJ42_RS04300 (BMJ42_00805) | - | 750599..751309 (+) | 711 | WP_000062219.1 | ABC transporter ATP-binding protein | - |
| BMJ42_RS04305 (BMJ42_00806) | - | 751616..752272 (+) | 657 | WP_000268677.1 | CBS domain-containing protein | - |
| BMJ42_RS04315 (BMJ42_00807) | prfB | 752380..753475 (+) | 1096 | WP_010963246.1 | peptide chain release factor 2 | - |
| BMJ42_RS04320 (BMJ42_00808) | ftsE | 753493..754185 (+) | 693 | WP_000022268.1 | cell division ATP-binding protein FtsE | - |
| BMJ42_RS04325 (BMJ42_00809) | ftsX | 754178..755104 (+) | 927 | WP_000625538.1 | permease-like cell division protein FtsX | - |
| BMJ42_RS04330 (BMJ42_00810) | - | 755390..757570 (+) | 2181 | WP_000974078.1 | PTS transporter subunit IIBC | - |
| BMJ42_RS04335 (BMJ42_00811) | - | 757622..758437 (+) | 816 | WP_000670831.1 | endonuclease/exonuclease/phosphatase family protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21358.36 Da Isoelectric Point: 4.4910
>NTDB_id=206048 BMJ42_RS04265 WP_000613477.1 745559..746149(+) (clpP) [Streptococcus pneumoniae strain SP49]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN
Nucleotide
Download Length: 591 bp
>NTDB_id=206048 BMJ42_RS04265 WP_000613477.1 745559..746149(+) (clpP) [Streptococcus pneumoniae strain SP49]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGGACTGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGGACTGTCATCGCATCAAGTGGAGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| clpP | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| clpP | Streptococcus thermophilus LMG 18311 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus thermophilus LMD-9 |
92.821 |
99.49 |
0.923 |
| clpP | Streptococcus pyogenes JRS4 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus pyogenes MGAS315 |
90.769 |
99.49 |
0.903 |
| clpP | Streptococcus mutans UA159 |
85.714 |
100 |
0.857 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.128 |
99.49 |
0.847 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
84.615 |
99.49 |
0.842 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
58.854 |
97.959 |
0.577 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.031 |
98.469 |
0.571 |