Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DN94_03685 Genome accession   CP007565
Coordinates   689329..689982 (+) Length   217 a.a.
NCBI ID   AHX74815.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 684329..694982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_03660 - 684532..685362 (+) 831 AHX74810.1 membrane protein -
  DN94_03665 - 685597..687147 (+) 1551 AHX74811.1 RNA helicase -
  DN94_03670 - 687332..687598 (-) 267 AHX74812.1 hypothetical protein -
  DN94_03675 - 687591..688355 (-) 765 AHX74813.1 hypothetical protein -
  DN94_03680 - 688490..689230 (+) 741 AHX74814.1 acyl-phosphate glycerol 3-phosphate acyltransferase -
  DN94_03685 comEA/celA/cilE 689329..689982 (+) 654 AHX74815.1 competence protein CelA Machinery gene
  DN94_03690 comEC/celB 689966..692203 (+) 2238 AHX74816.1 competence protein ComEC Machinery gene
  DN94_03695 - 692329..692985 (+) 657 AHX74817.1 HAD family hydrolase -
  DN94_03705 - 693149..693814 (+) 666 AHX74818.1 LacI family transcriptional regulator -
  DN94_03710 - 693804..694796 (-) 993 AHX74819.1 GDXG lipolytic enzyme family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23714.05 Da        Isoelectric Point: 9.2366

>NTDB_id=20550 DN94_03685 AHX74815.1 689329..689982(+) (comEA/celA/cilE) [Streptococcus agalactiae strain 138spar]
MFEIVLEKIKSHKWETTGIIVGLLLFGILGLNHFGTHHKEDDLNINLEKKVSTITEKKVPMISHVKDKVSNQVTVDVKGA
VNHPGVYSLPSQSRVTDAIKRAGGLSNLADSKSVNLAQKLQDETVIYVAQKGEKITVVEEEKANNIATQGNSKGKINLNK
ADLSSLQTISGVGAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEKLRQDVTID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=20550 DN94_03685 AHX74815.1 689329..689982(+) (comEA/celA/cilE) [Streptococcus agalactiae strain 138spar]
ATGTTTGAAATAGTATTGGAAAAAATTAAATCGCATAAATGGGAGACAACAGGAATTATTGTTGGACTCTTATTATTTGG
AATTTTGGGTTTAAATCATTTTGGCACTCATCATAAAGAAGACGATTTAAATATCAATTTAGAGAAAAAAGTATCAACTA
TAACAGAAAAAAAGGTACCAATGATTAGTCACGTCAAAGATAAAGTATCTAATCAAGTAACGGTTGACGTAAAAGGGGCA
GTCAATCATCCAGGTGTTTATAGTTTGCCTTCTCAAAGTCGTGTAACAGATGCGATTAAGCGTGCAGGTGGACTAAGCAA
TCTCGCTGATAGTAAATCCGTTAATCTAGCACAGAAATTACAAGATGAGACGGTTATCTATGTTGCTCAAAAAGGTGAAA
AAATAACTGTTGTGGAAGAGGAGAAAGCAAATAATATCGCCACTCAGGGAAATAGTAAGGGGAAAATTAATCTTAATAAA
GCAGATTTATCAAGTCTTCAGACCATATCAGGCGTTGGGGCTAAAAGAGCTCAAGATATTTTAGATTATCGTGATAGTCA
AGGTGGTTTTAAAACTATTGATGACCTCAAAAACGTATCAGGTATTGGTGAGAAAACACTAGAAAAATTACGTCAAGATG
TTACAATTGACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(153-215)

SLBB domain (SLBB)

(75-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

44.595

100

0.456
  comEA/celA/cilE Streptococcus mitis SK321

44.144

100

0.452
  comEA/celA/cilE Streptococcus pneumoniae Rx1

43.694

100

0.447
  comEA/celA/cilE Streptococcus pneumoniae D39

43.694

100

0.447
  comEA/celA/cilE Streptococcus pneumoniae R6

43.694

100

0.447
  comEA/celA/cilE Streptococcus mitis NCTC 12261

43.243

100

0.442
  comEA Lactococcus lactis subsp. cremoris KW2

39.013

100

0.401
  comEA Streptococcus thermophilus LMD-9

54.545

70.968

0.387

Multiple sequence alignment