Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSJM300_02420 Genome accession   CP003725
Coordinates   540269..541768 (-) Length   499 a.a.
NCBI ID   AFN76562.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535269..546768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_02405 - 535925..537934 (-) 2010 AFN76561.1 ATP-dependent DNA helicase Rep -
  PSJM300_02420 comM 540269..541768 (-) 1500 AFN76562.1 magnesium chelatase subunit D/I family protein Machinery gene
  PSJM300_02425 - 541802..542065 (-) 264 AFN76563.1 hypothetical protein -
  PSJM300_02430 - 542447..542785 (+) 339 AFN76564.1 nitrogen regulatory protein P-II 2 -
  PSJM300_02435 - 542929..544140 (+) 1212 AFN76565.1 ammonium transporter -
  PSJM300_02440 - 544293..544718 (+) 426 AFN76566.1 hypothetical protein -
  PSJM300_02445 - 544794..545123 (+) 330 AFN76567.1 hypothetical protein -
  PSJM300_02450 - 545293..545997 (-) 705 AFN76568.1 HAD superfamily hydrolase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52851.49 Da        Isoelectric Point: 7.4904

>NTDB_id=20445 PSJM300_02420 AFN76562.1 540269..541768(-) (comM) [Pseudomonas stutzeri DSM 10701]
MSLAIVHSRAQVGVEAPCVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQIPADSLDGIECLGELALSGALRPVQGVLPAALAAREAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFSGQTPIPAYQAQGLLRQVLPYPDLADVQGQLSAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIQSVASQSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDRVRFPARFQLVAAMNPCPCGYLGDPGGRCRCTPDQIQRYRGKLSGPLLDRIDLHLTVAREATSLNATPVS
SENSATVAAEVARARRVQQARQGCANAFLDLTGLRSHCALSAEDQQWLERACERLALSLRAAHRILKVARTLADLESSAA
IGRQHLAEALQYRPGSQAG

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=20445 PSJM300_02420 AFN76562.1 540269..541768(-) (comM) [Pseudomonas stutzeri DSM 10701]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAGGTAGGCGTGGAAGCGCCTTGCGTCACGGTCGAGGCGCACCTTGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCCGTGAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TGACGTCCGGCTTCGATTTTCCCGCGCGGCGCATCACCTTGAATCTCGCCCCGGCCGATCTGCCCAAGGATGGCGGGCGT
TTCGACCTGTCCATCGCCCTGGGCATTCTCGCCGCCAGTGGCCAGATCCCCGCCGACAGCCTGGACGGCATCGAATGCCT
GGGCGAGCTGGCGCTTTCGGGCGCGTTGCGTCCGGTGCAGGGCGTATTGCCAGCGGCCCTGGCGGCACGCGAAGCCGGCC
GTGCGTTGCTGGTGCCACGGGCCAATGCCGAGGAAGCCAGCCTGGCCTCCGGCCTGACTGTCTACGCCGCCGAACACCTC
TTGGAAGTCGCCGCGCACTTCAGCGGCCAGACACCTATCCCCGCCTACCAGGCCCAAGGGCTGCTGCGACAGGTGCTGCC
CTACCCTGACCTTGCCGATGTGCAGGGTCAGCTGTCCGCCAAGCGCGGCCTGCTGATCGCCGCGGCAGGCGCGCACAATC
TCCTGTTCAGCGGCCCGCCCGGCACCGGCAAGACACTGCTGGCCAGCCGCCTGCCCGGTCTGCTGCCGCCGCTGGAGGAG
CAGGAAGCGCTGGAAGTGGCGGCGATCCAGTCGGTGGCCAGCCAATCGCCGCTGGAGCACTGGCCGCAGAGGCCGTTTCG
CCAGCCCCATCACAGTGCATCGGGACCGGCGCTGGTGGGTGGCGGCAGTCGTCCGCAGCCGGGCGAGATTACCCTGGCCC
ATCAGGGGGTGCTGTTTCTCGACGAGTTGCCAGAGTTCGACCGCAAGGTACTGGAGGTTTTAAGGGAGCCCCTGGAAAGT
GGCCATATCGTGATCGCCCGTGCCCGGGACCGCGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCAGCGATGAATCCCTG
CCCTTGCGGCTATCTCGGCGACCCCGGCGGGCGCTGCCGCTGCACGCCGGACCAGATCCAGCGCTACCGCGGCAAGCTCT
CGGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACTTCGCTCAACGCGACGCCGGTCAGC
AGCGAGAACAGTGCAACGGTCGCCGCCGAGGTGGCGCGTGCACGCCGGGTCCAGCAGGCGCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTCACCGGCCTGCGCAGCCATTGCGCACTGAGCGCAGAGGACCAGCAATGGCTGGAGCGCGCCTGCGAAC
GCCTCGCCCTGTCCCTGCGCGCCGCGCATCGAATTCTCAAGGTCGCACGAACCCTGGCCGACCTGGAAAGCAGCGCCGCG
ATCGGCCGTCAGCACCTGGCCGAAGCGCTGCAGTATCGACCGGGAAGCCAGGCGGGTTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.778

99.198

0.573
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.768

99.198

0.563
  comM Vibrio cholerae strain A1552

56.768

99.198

0.563
  comM Acinetobacter baylyi ADP1

56.275

98.998

0.557
  comM Glaesserella parasuis strain SC1401

55.09

100

0.553
  comM Haemophilus influenzae Rd KW20

54.348

100

0.551
  comM Legionella pneumophila str. Paris

51.186

100

0.519
  comM Legionella pneumophila strain ERS1305867

51.186

100

0.519
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.463
  comM Helicobacter pylori 26695

36.811

100

0.375