Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DN94_07050 Genome accession   CP007565
Coordinates   1369683..1370273 (-) Length   196 a.a.
NCBI ID   AHX75406.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364683..1375273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_07025 - 1365391..1366086 (-) 696 AHX75402.1 branched-chain amino acid ABC transporter ATP-binding protein -
  DN94_07035 - 1367043..1367912 (-) 870 AHX75403.1 ABC transporter permease -
  DN94_07040 - 1368019..1369185 (-) 1167 AHX75404.1 branched-chain amino acid ABC transporter substrate-binding protein -
  DN94_07045 - 1369338..1369583 (-) 246 AHX75405.1 hypothetical protein -
  DN94_07050 clpP 1369683..1370273 (-) 591 AHX75406.1 Clp protease Regulator
  DN94_07055 - 1370398..1371027 (-) 630 AHX75407.1 uracil phosphoribosyltransferase -
  DN94_07060 - 1371137..1372306 (-) 1170 AHX75408.1 cysteine desulfurase -
  DN94_07065 - 1372442..1372990 (-) 549 AHX75409.1 RNA methyltransferase -
  DN94_07070 - 1373163..1374518 (-) 1356 AHX75410.1 amino acid-polyamine-organocation (APC) family permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21550.52 Da        Isoelectric Point: 4.5933

>NTDB_id=20310 DN94_07050 AHX75406.1 1369683..1370273(-) (clpP) [Streptococcus agalactiae strain 138spar]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQ
SIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=20310 DN94_07050 AHX75406.1 1369683..1370273(-) (clpP) [Streptococcus agalactiae strain 138spar]
ATGATTCCAGTAGTTATTGAACAAACAAGTCGTGGTGAACGTTCTTATGATATTTACTCACGTCTTTTAAAAGATCGTAT
TATTATGTTGACAGGCCAAGTTGAGGATAATATGGCCAATAGTATCATTGCACAGTTATTGTTTCTCGATGCACAAGATA
ATACAAAGGATATTTACCTTTATGTCAATACACCAGGTGGTTCAGTATCGGCTGGACTTGCTATTGTGGACACCATGAAC
TTCATTAAATCGGACGTACAGACGATTGTTATGGGGATGGCTGCTTCGATGGGAACCATTATTGCTTCAAGTGGTGCTAA
AGGAAAACGTTTTATGTTACCGAATGCAGAATATATGATCCACCAACCAATGGGCGGAACAGGCGGAGGTACACAGCAAT
CTGATATGGCTATCGCTGCTGAGCATCTTTTAAAAACGCGTCATACTTTAGAAAAAATCTTAGCTGATAATTCTGGTCAA
TCTATTGAAAAAGTCCATGATGATGCAGAGCGTGATCGTTGGATGAGTGCTCAAGAAACACTTGATTATGGCTTTATTGA
TGCTATTATGGAAAATAATAATTTACAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

92.347

100

0.923
  clpP Streptococcus thermophilus LMD-9

92.347

100

0.923
  clpP Streptococcus pneumoniae Rx1

92.308

99.49

0.918
  clpP Streptococcus pneumoniae D39

92.308

99.49

0.918
  clpP Streptococcus pneumoniae R6

92.308

99.49

0.918
  clpP Streptococcus pneumoniae TIGR4

92.308

99.49

0.918
  clpP Streptococcus pyogenes JRS4

89.286

100

0.893
  clpP Streptococcus pyogenes MGAS315

89.286

100

0.893
  clpP Streptococcus mutans UA159

88.776

100

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.204

100

0.852
  clpP Lactococcus lactis subsp. cremoris KW2

84.694

100

0.847
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

96.939

0.561

Multiple sequence alignment