Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AB478_RS02555 Genome accession   NZ_CP017679
Coordinates   526893..527462 (+) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain CFSAN007883     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 521893..532462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB478_RS02530 (AB478_02435) cysE 523106..523753 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  AB478_RS02535 (AB478_02440) cysS 523737..525137 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  AB478_RS02540 (AB478_02445) - 525130..525534 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  AB478_RS02545 (AB478_02450) rlmB 525542..526288 (+) 747 WP_099143888.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB478_RS02550 (AB478_02455) - 526288..526812 (+) 525 WP_000664738.1 NYN domain-containing protein -
  AB478_RS02555 (AB478_02460) sigH 526893..527462 (+) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB478_RS02560 rpmG 527577..527720 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  AB478_RS02565 (AB478_02465) secE 527776..527958 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  AB478_RS02570 (AB478_02470) nusG 527971..528519 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  AB478_RS02575 (AB478_02475) rplK 528700..529122 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  AB478_RS02580 (AB478_02480) rplA 529330..530022 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  AB478_RS02590 (AB478_02485) rplJ 530294..530794 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  AB478_RS02595 (AB478_02490) rplL 530837..531205 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  AB478_RS02600 (AB478_02495) - 531380..531988 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=201581 AB478_RS02555 WP_000872872.1 526893..527462(+) (sigH) [Staphylococcus aureus strain CFSAN007883]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=201581 AB478_RS02555 WP_000872872.1 526893..527462(+) (sigH) [Staphylococcus aureus strain CFSAN007883]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment