Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SSU05_0653 Genome accession   CP000407
Coordinates   635628..636290 (+) Length   220 a.a.
NCBI ID   ABP89619.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630628..641290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0649 - 631342..632172 (-) 831 ABP89614.1 ABC-type Fe3+-hydroxamate transport system, periplasmic component -
  SSU05_0648 - 632153..632302 (+) 150 ABP89615.1 hypothetical protein -
  SSU05_0650 - 632284..632883 (-) 600 ABP89616.1 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component -
  SSU05_0651 - 633222..634667 (-) 1446 ABP89617.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase (UDP-MurNac-tripeptide synthetase) -
  SSU05_0652 - 634798..635565 (+) 768 ABP89618.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SSU05_0653 comEA/celA/cilE 635628..636290 (+) 663 ABP89619.1 DNA uptake protein and related DNA-binding proteins Machinery gene
  SSU05_0654 comEC/celB 636229..638511 (+) 2283 ABP89620.1 Predicted membrane metal-binding protein Machinery gene
  SSU05_0655 - 638836..639204 (+) 369 ABP89621.1 hypothetical protein -
  SSU05_0656 - 639214..639495 (+) 282 ABP89622.1 CBS domain protein -
  SSU05_0657 - 639590..640417 (+) 828 ABP89623.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23410.01 Da        Isoelectric Point: 4.0676

>NTDB_id=20149 SSU05_0653 ABP89619.1 635628..636290(+) (comEA/celA/cilE) [Streptococcus suis 05ZYH33]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFPQTEQASSSQEQTEETSTEESEELSQLTVDVK
GAVEKPGLYTLEAGARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSPEEKSTSLVN
LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVNDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=20149 SSU05_0653 ABP89619.1 635628..636290(+) (comEA/celA/cilE) [Streptococcus suis 05ZYH33]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCAGCAGTGGCTGGCTTGCT
AATGGCGACGTTTTTAATATTCAGCCAACCTGCTAAGTCTGATCAAACAGGACTGACAGATTTTCCTCAAACCGAGCAAG
CTTCTAGCAGTCAGGAGCAGACGGAGGAAACCAGTACAGAAGAGAGTGAGGAGCTCAGCCAGCTAACCGTTGATGTCAAA
GGAGCGGTGGAAAAGCCTGGGTTATATACTTTAGAAGCTGGTGCGCGTGTCAATGACGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGATGAGGCGGTGGTCTATGTAGCCAGCAAGG
ACGAAAACATCTCGGTGGTGGCCAGCACGACTGCCAGCTCTGCTATGTCTCCAGAAGAAAAAAGCACCAGTCTGGTCAAT
CTGAATACGGCGACTGAGGCGGACTTGCAGACCATTTCGGGTATCGGTGCCAAGCGGGCGGCGGACATTATCGCCTATCG
TGAGGCAAACGGTGGCTTCAAGTCGGTGAACGACCTCAACAATGTTTCGGGCATTGGCGACAAGACCATGGAAAGCATTC
GGCCTTATGTCACGGTTGAGTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(157-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae D39

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae R6

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus mitis SK321

46.637

100

0.473
  comEA Streptococcus thermophilus LMD-9

59.259

73.636

0.436
  comEA Lactococcus lactis subsp. cremoris KW2

37.788

98.636

0.373
  comEA Bacillus subtilis subsp. subtilis str. 168

37.559

96.818

0.364

Multiple sequence alignment